© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5029.t1 |
| Gene name | |
| Location | scaffold_027:84812..85363 |
| Strand | + |
| Gene length (bp) | 551 |
| Transcript length (bp) | 357 |
| Coding sequence length (bp) | 357 |
| Protein length (aa) | 119 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02991 | ATG8 | Autophagy protein Atg8 ubiquitin like | 3.6E-51 | 13 | 116 |
| PF04110 | APG12 | Ubiquitin-like autophagy protein Apg12 | 4.1E-06 | 39 | 116 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005737 | cytoplasm | Yes |
| GO:0000045 | autophagosome assembly | Yes |
| GO:1905037 | autophagosome organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0006996 | organelle organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0005575 | cellular_component | No |
| GO:0007033 | vacuole organization | No |
| GO:0070925 | organelle assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5029.t1 MRSKFKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKA IFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGDC* |
| Coding | >Ani_SJS100_1|g5029.t1 ATGCGTTCCAAGTTTAAGGACGAGCACCCCTTCGAGAAGCGCAAGGCAGAGGCCGAGCGTATCCGTCAGAAATAT GCCGATCGCATTCCAGTAATCTGCGAAAAGGTCGAGAAATCGGACATCGCTACCATCGACAAGAAGAAATATCTT GTCCCTGCCGACCTTACCGTTGGGCAGTTCGTCTACGTGATCCGTAAGCGGATTAAGCTGTCCCCCGAGAAGGCG ATCTTTATCTTTGTCGACGAGGTTTTGCCGCCTACGGCCGCTCTCATGAGCAGTATCTACGAAGAGCACAAGGAT GAAGATGGCTTCTTGTATATCACGTACTCCGGCGAGAATACGTTTGGTGACTGCTAG |
| Transcript | >Ani_SJS100_1|g5029.t1 ATGCGTTCCAAGTTTAAGGACGAGCACCCCTTCGAGAAGCGCAAGGCAGAGGCCGAGCGTATCCGTCAGAAATAT GCCGATCGCATTCCAGTAATCTGCGAAAAGGTCGAGAAATCGGACATCGCTACCATCGACAAGAAGAAATATCTT GTCCCTGCCGACCTTACCGTTGGGCAGTTCGTCTACGTGATCCGTAAGCGGATTAAGCTGTCCCCCGAGAAGGCG ATCTTTATCTTTGTCGACGAGGTTTTGCCGCCTACGGCCGCTCTCATGAGCAGTATCTACGAAGAGCACAAGGAT GAAGATGGCTTCTTGTATATCACGTACTCCGGCGAGAATACGTTTGGTGACTGCTAG |
| Gene | >Ani_SJS100_1|g5029.t1 ATGCGTTCCAAGTTTAAGGACGAGCACCCCTTCGAGAAGCGCAAGGCAGAGGCCGAGCGTATCCGTCAGAAATAT GCCGATCGCATTCCAGTACGTCTATCCTTTGTTTTATTTTCTACTGTGATCTTGATTTCACGGTCTTTTGGGGGA AGGAACGGGTCTCTAGCTCACCGCTTGTTCGAGTCGCTAACCCGGCTCCTATCCTACAGGTAATCTGCGAAAAGG TCGAGAAATCGGACATCGCTACCATCGACAAGAAGAAATATCTTGTCCCTGCCGACCTTACCGTTGGGCAGTTCG TCTACGTGATCCGTAAGCGGATTAAGCTGTCCCCCGAGAAGGCGATCTTTATCTTTGTCGACGAGGTTTTGCCGC CTACGGCCGCTCTCATGAGCAGTATCTACGAAGAGCACAAGGATGAAGATGGCTTCTTGTATATCACGTATGCCG ATCCCTCTGATTTCCTACTACCACTGTTCTGTGTGCATAGTGCTAACTCGGATCTTCTCTTTATCAGGTACTCCG GCGAGAATACGTTTGGTGACTGCTAG |