© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5013.t1 |
| Gene name | |
| Location | scaffold_027:35335..39459 |
| Strand | - |
| Gene length (bp) | 4124 |
| Transcript length (bp) | 1971 |
| Coding sequence length (bp) | 1971 |
| Protein length (aa) | 657 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 1.6E-06 | 515 | 530 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.3E-05 | 537 | 552 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.0E-07 | 568 | 584 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.4E-06 | 598 | 614 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.2E-08 | 616 | 632 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.6E-05 | 639 | 656 |
| PF12937 | F-box-like | F-box-like | 3.0E-07 | 32 | 71 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.5E+00 | 516 | 530 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 6.0E+00 | 538 | 552 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.6E-01 | 569 | 583 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.4E+00 | 597 | 613 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 8.4E-02 | 618 | 632 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.9E+00 | 639 | 655 |
| PF00646 | F-box | F-box domain | 3.2E-06 | 27 | 68 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.5 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5013.t1 MPKRRNVEVLPPPKRLRMTPSGHLDHISTLSDELLLHILSFLPLPALLVCQQLSRRFHVLAGDSELWKRQYYSRW VRPRARRLPNAKRAHLSRSEIEYSPRVSTWLDHSHLAKEGVATNWKRQYRLRHNWSKGVCRVTEIEFQQPLRRQM LVTFCAGIVLTADLDHGLRAWAAEKPGQCLARSPLTKSPSRSLPAPTAMAAATSGPQQSLIDVTVGFEDGRLGVY TLDTTTFWIETRFSYVECTGEAITAMALCSPFLLLVSQHKVLSLYETITDEDGSSLTPQLLTTLKADSILEPLSL SIRAAGPKIVAAIVYSFYHIGCGWSLGIQELQFGLDGQQLSSRLATTVDCQYGIVSPTSRSRSKRDYRTTHVVGS GNELNFRPSGPSISHCEPPTSVSYSHPYLLTSHADNTLTLYLVVSTSTSLSVTSCQRLWGHTSSVSAVQVSDRGK AVSASNHEAPGAKWLSPSDERRGGYHPWRSESLDWYGKANKKSSFILGGDASHQARDCPKKGTPTCYNCGGQGHV SRECTVAPKEKSCYRCGGVGHISRECQASPAEGFGAAAGGGQECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCY SCGGFGHMARDCTNGQKCYNCGEVGHVSRDCPTEAKGERVCYNCKQPGHVQAACPN* |
| Coding | >Ani_SJS100_1|g5013.t1 ATGCCAAAGAGGCGCAATGTTGAAGTTCTCCCTCCGCCAAAGCGTCTCCGCATGACCCCCAGCGGCCATCTCGAT CACATATCCACACTAAGTGACGAGCTCCTACTTCATATACTGTCTTTTCTTCCTCTCCCCGCTCTGCTAGTCTGC CAACAACTCTCGCGTCGGTTCCATGTCTTAGCTGGAGATTCGGAGCTCTGGAAAAGGCAGTATTATTCTCGATGG GTACGGCCTCGAGCGCGTCGGTTACCAAATGCTAAGCGTGCACACTTATCCCGATCTGAAATCGAGTATTCGCCT AGAGTGTCTACCTGGCTTGACCACAGTCACCTGGCAAAGGAAGGAGTAGCCACGAATTGGAAGCGACAGTATCGT CTCAGACACAACTGGTCAAAGGGAGTCTGTCGGGTCACAGAGATCGAGTTTCAACAACCACTTCGTCGACAGATG CTAGTAACCTTTTGTGCTGGTATCGTGCTTACAGCAGATTTAGATCACGGCCTAAGAGCTTGGGCCGCCGAGAAG CCTGGACAATGCCTAGCAAGGTCTCCTTTGACAAAATCGCCGTCGCGATCGTTACCCGCTCCTACAGCAATGGCG GCTGCAACGAGCGGTCCACAGCAGAGCTTAATAGATGTCACAGTTGGTTTTGAGGATGGCCGTCTCGGTGTCTAT ACTCTAGACACAACAACTTTCTGGATTGAAACGCGCTTTTCCTACGTTGAATGCACCGGTGAAGCCATCACGGCA ATGGCCTTGTGCTCCCCTTTCCTCCTTTTAGTCTCTCAACACAAGGTTCTATCTCTGTATGAAACAATCACAGAC GAGGACGGTTCTTCTTTAACCCCACAGCTACTGACTACTCTCAAGGCGGACAGTATATTGGAGCCATTATCTCTA TCTATCCGCGCTGCGGGTCCCAAGATAGTAGCGGCTATAGTGTACAGTTTTTACCATATAGGCTGCGGCTGGTCG CTAGGTATTCAAGAACTGCAATTCGGCTTGGACGGTCAGCAGCTGAGTTCTCGGCTTGCTACCACAGTCGACTGC CAATACGGGATTGTGTCCCCAACATCTCGCAGCCGGTCAAAAAGGGACTATCGCACCACACATGTGGTAGGCTCC GGAAATGAGCTAAATTTCAGGCCATCCGGACCTTCAATATCACACTGTGAGCCACCAACCTCGGTGTCCTATTCT CATCCTTACCTTTTGACGTCGCACGCGGACAATACCTTGACTCTGTACCTTGTGGTCTCCACTTCGACAAGCCTT TCTGTGACAAGCTGCCAGCGTCTCTGGGGCCATACATCGTCAGTCTCAGCCGTGCAGGTTAGCGATCGTGGTAAG GCAGTTTCGGCATCAAATCATGAAGCACCTGGTGCGAAATGGCTTTCACCGTCTGATGAGCGTCGCGGTGGTTAC CATCCCTGGCGAAGCGAATCTCTGGATTGGTACGGAAAAGCTAACAAGAAATCTTCATTCATTTTAGGCGGTGAT GCTTCCCACCAGGCCCGTGACTGTCCCAAGAAGGGCACTCCCACCTGCTACAACTGTGGTGGACAGGGACACGTC AGCCGTGAATGCACTGTAGCTCCCAAGGAGAAGTCCTGCTACCGCTGCGGTGGTGTGGGCCACATCTCCCGCGAG TGCCAGGCTAGCCCCGCCGAGGGTTTCGGTGCTGCTGCTGGTGGTGGCCAGGAGTGCTACAAGTGCGGCCGTGTC GGTCACATTGCTAGGAATTGCCCTCAGAGCGGCGGCTACAGTGGTGGCTTTGGCGGTCGTCAGCAGACTTGCTAC TCTTGCGGTGGTTTCGGACACATGGCTCGCGACTGCACCAATGGTCAGAAGTGCTACAACTGCGGTGAGGTTGGC CACGTCTCTCGCGACTGCCCTACGGAGGCCAAGGGCGAGCGGGTGTGCTACAACTGCAAGCAGCCTGGCCACGTC CAGGCCGCTTGCCCTAACTAA |
| Transcript | >Ani_SJS100_1|g5013.t1 ATGCCAAAGAGGCGCAATGTTGAAGTTCTCCCTCCGCCAAAGCGTCTCCGCATGACCCCCAGCGGCCATCTCGAT CACATATCCACACTAAGTGACGAGCTCCTACTTCATATACTGTCTTTTCTTCCTCTCCCCGCTCTGCTAGTCTGC CAACAACTCTCGCGTCGGTTCCATGTCTTAGCTGGAGATTCGGAGCTCTGGAAAAGGCAGTATTATTCTCGATGG GTACGGCCTCGAGCGCGTCGGTTACCAAATGCTAAGCGTGCACACTTATCCCGATCTGAAATCGAGTATTCGCCT AGAGTGTCTACCTGGCTTGACCACAGTCACCTGGCAAAGGAAGGAGTAGCCACGAATTGGAAGCGACAGTATCGT CTCAGACACAACTGGTCAAAGGGAGTCTGTCGGGTCACAGAGATCGAGTTTCAACAACCACTTCGTCGACAGATG CTAGTAACCTTTTGTGCTGGTATCGTGCTTACAGCAGATTTAGATCACGGCCTAAGAGCTTGGGCCGCCGAGAAG CCTGGACAATGCCTAGCAAGGTCTCCTTTGACAAAATCGCCGTCGCGATCGTTACCCGCTCCTACAGCAATGGCG GCTGCAACGAGCGGTCCACAGCAGAGCTTAATAGATGTCACAGTTGGTTTTGAGGATGGCCGTCTCGGTGTCTAT ACTCTAGACACAACAACTTTCTGGATTGAAACGCGCTTTTCCTACGTTGAATGCACCGGTGAAGCCATCACGGCA ATGGCCTTGTGCTCCCCTTTCCTCCTTTTAGTCTCTCAACACAAGGTTCTATCTCTGTATGAAACAATCACAGAC GAGGACGGTTCTTCTTTAACCCCACAGCTACTGACTACTCTCAAGGCGGACAGTATATTGGAGCCATTATCTCTA TCTATCCGCGCTGCGGGTCCCAAGATAGTAGCGGCTATAGTGTACAGTTTTTACCATATAGGCTGCGGCTGGTCG CTAGGTATTCAAGAACTGCAATTCGGCTTGGACGGTCAGCAGCTGAGTTCTCGGCTTGCTACCACAGTCGACTGC CAATACGGGATTGTGTCCCCAACATCTCGCAGCCGGTCAAAAAGGGACTATCGCACCACACATGTGGTAGGCTCC GGAAATGAGCTAAATTTCAGGCCATCCGGACCTTCAATATCACACTGTGAGCCACCAACCTCGGTGTCCTATTCT CATCCTTACCTTTTGACGTCGCACGCGGACAATACCTTGACTCTGTACCTTGTGGTCTCCACTTCGACAAGCCTT TCTGTGACAAGCTGCCAGCGTCTCTGGGGCCATACATCGTCAGTCTCAGCCGTGCAGGTTAGCGATCGTGGTAAG GCAGTTTCGGCATCAAATCATGAAGCACCTGGTGCGAAATGGCTTTCACCGTCTGATGAGCGTCGCGGTGGTTAC CATCCCTGGCGAAGCGAATCTCTGGATTGGTACGGAAAAGCTAACAAGAAATCTTCATTCATTTTAGGCGGTGAT GCTTCCCACCAGGCCCGTGACTGTCCCAAGAAGGGCACTCCCACCTGCTACAACTGTGGTGGACAGGGACACGTC AGCCGTGAATGCACTGTAGCTCCCAAGGAGAAGTCCTGCTACCGCTGCGGTGGTGTGGGCCACATCTCCCGCGAG TGCCAGGCTAGCCCCGCCGAGGGTTTCGGTGCTGCTGCTGGTGGTGGCCAGGAGTGCTACAAGTGCGGCCGTGTC GGTCACATTGCTAGGAATTGCCCTCAGAGCGGCGGCTACAGTGGTGGCTTTGGCGGTCGTCAGCAGACTTGCTAC TCTTGCGGTGGTTTCGGACACATGGCTCGCGACTGCACCAATGGTCAGAAGTGCTACAACTGCGGTGAGGTTGGC CACGTCTCTCGCGACTGCCCTACGGAGGCCAAGGGCGAGCGGGTGTGCTACAACTGCAAGCAGCCTGGCCACGTC CAGGCCGCTTGCCCTAACTAA |
| Gene | >Ani_SJS100_1|g5013.t1 ATGCCAAAGAGGCGCAATGTTGAAGTTCTCCCTCCGCCAAAGCGTCTCCGCATGACCCCCAGCGGCCATCTCGAT CACATATCCACACTAAGTGACGAGCTCCTACTTCATATACTGTCTTTTCTTCCTCTCCCCGCTCTGCTAGTCTGC CAACAGTATGTCCTCCTCAGTTCAGAGTGCCGGCTTCAAAGCTCATTACTTCTCCCCACATAGACTCTCGCGTCG GTTCCATGTCTTAGCTGGAGATTCGGAGCTCTGGAAAAGGCAGTATTATTCTCGATGGGTACGGCCTCGAGCGCG TCGGTTACCAAATGCTAAGCGTGCACACTTATCCCGATCTGAAATCGAGTATTCGCCTAGAGTGTCTACCTGGCT TGACCACAGTCACCTGGCAAAGGAAGGAGTAGCCACGAATTGGAAGCGACAGTATCGTCTCAGACACAACTGGTC AAAGGGAGTCTGTCGGGTCACAGAGATCGAGTTTCAACAACCACTTCGTCGACAGATGCTAGTAACCTTTTGTGC TGGTATCGTGCTTACAGCAGATTTAGATCACGGCCTAAGAGCTTGGGCCGCCGAGAAGCCTGGACAATGCCTAGC AAGGTCTCCTTTGACAAAATCGCCGTCGCGATCGTTACCCGCTCCTACAGCAATGGCGGCTGCAACGAGCGGTCC ACAGCAGAGCTTAATAGATGTCACAGTTGGTTTTGAGGATGGCCGTCTCGGTGTCTATACTCTAGACACAACAAC TTTCTGGATTGAAACGCGCTTTTCCTACGTTGAATGCACCGGTGAAGCCATCACGGCAATGGCCTTGTGCTCCCC TTTCCTCCTTTTAGTCTCTCAACACAAGGTTCTATCTCTGTATGAAACAATCACAGACGAGGACGGTTCTTCTTT AACCCCACAGCTACTGACTACTCTCAAGGCGGACAGTATATTGGAGCCATTATCTCTATCTATCCGCGCTGCGGG TCCCAAGATAGTAGCGGCTATAGTGTACAGTTTTTACCATATAGGCTGCGGCTGGTCGCTAGGTATTCAAGAACT GCAATTCGGCTTGGACGGTCAGCAGCTGAGTTCTCGGCTTGCTACCACAGTCGACTGCCAATACGGGATTGTGTC CCCAACATCTCGCAGCCGGTCAAAAAGGGACTATCGCACCACACATGTGGTAGGCTCCGGAAATGAGCTAAATTT CAGGCCATCCGGACCTTCAATATCACACTGTGAGCCACCAACCTCGGTGTCCTATTCTCATCCTTACCTTTTGAC GTCGCACGCGGACAATACCTTGACTCTGTACCTTGTGGTCTCCACTTCGACAAGCCTTTCTGTGACAAGCTGCCA GCGTCTCTGGGGCCATACATCGTCAGTCTCAGCCGTGCAGGTTAGCGATCGTGGTAAGGCAGTTTCGGTGAGCTC TAGAGGAGACGACATCAGAATATGGGAACTTGAATCTTTGGTTTCTTCGCTCGGAGGGCACAAGGCGTTAAAGGA TGGGAATAGCATCCGAGTCAGCCCGGGAAACAGGGCAGATCAACGACCTGATAGCCTTGACTTAGTGTCGGAGTC TTCTCACGGTCAACTCAACGCGGCCCGATCAAGCTCGGTGGACAATAGCTACAGGTCAACGAGGATGCACAATTG TATTGGCTTCGACGATGAGCGAGTCCTTCTGCTTCGCGAAAAGGAAGCTGGGACGCAGATGCTCGAATTATATGA CTTCACGTGAAATACAAAATTTGTAATGAAACAATATATAGATACCATAGATTAGTGTGCATGCTTGGTCAGAAA AGCCTTTGCGAGCCATTTGCTATCGAAAGGTCTGACTATGTCGCCAATAAACTGTCCAACGCCTGTTCAAGAAGA GCTATTCATGGCAACAGCAAGCAGAAAAATGAGGAAACCGAGGAGTAAGCACAAGCCGTTCTAGATCGACATGGG AAACCTCAAGGTGCAACCAAGGTGTCCGGTCCGGAGAGGACCTTGGGAGGGAGCCATAAGAGTCACGACGTAGTT TAAAGCGCTATCATCCTGCCCCGAACTGAAGGACGGTTTCCCTCCCCCTATCTCCCTTTCTCCCGCGGTCATGTT AGATGTTATTTGCAGTTCGACGCGAGCGGCCTACTAGGGGCTGTCTCATCACTTTGTCCACACTTCTACCCTTTG AAAAATGGTTGCGCAAACACTTGCTAATTAAAAGGCATCAAATCATGAAGCACCTGGTGCGAAATGGCTTTCACC GTCTGATGAGCGTGTTGCCTAGGTTCAGTCTGCTTTCGTCCTTGTTGTCGCGAGGGGAAAGCATGAGTATGTACC AATCTCACGAGGTCTTTTAGGGCCTCGCCAAAGACCTCTCTTCTTCCTCATTGTGACGGCTGCGATCGCCACCAC ATGTACGGCATAATGGCGGATCGCTAAACGCTACCTGGAAAAGCTAAGTAAGACTTGGCTTAAGGGCACAGCATG GGTGTGGGTATGGCGCGAAAAGCCAGGATCAAACCCAGGTCTGGAAGCGGGCAGCTGTTGTGTGTTGCGGCCTCC CGGGCGTTAAAGCCCTGCAGGAACCACGGGAAGCGCTCCCCCGCACCGACTGTCCGCATATCTGATTTATTTTTC CTTCTGGCTATTATTTATCGGCGCTAGCAAGAAATCCCTACCTAAATTTCTGATCGCCCAGTTTCCACCCCCCTC TCAAACCCTCACCTGGCCATCATCATTCTCTCTCTCTCTCTCTTACCTCCTCACTCCAAAAGTTCTTTACCAGTT TCACCTACATCCTATATCCACAATGAGTTTCCAAGCTGGAGGTCGTGGCTGCTTCAACTGTGAGTCCCTCCCCCC GCTCTGTTCCGTCGATGGTCAAACCTGTGCCCTTCGATTCTGTCATGCACCTTGTGTGCCTCCATTCCCGCAGCT CCAGCCGAGAGAGGGAAAAAAAGTTTCCTTGATTACCATGATATGATTTCCCATCATCCACCGAGTTTTGCTTTA TGTCCTCAGTTAAAAGCTGAGATCTTTTGACCTTCCATGACCATCTATCCGTCCCCATTTCTCTCATAGCGAATG ATCCTGTCGTCTTAGCGCGGTGGTTACCATCCCTGGCGAAGCGAATCTCTGGATTGGTACGGAAAAGCTAACAAG AAATCTTCATTCATTTTAGGCGGTGATGCTTCCCACCAGGTAAACCTTTCCCTGTCACCATCGTCTCCTCAGAGC ATCCTCAGTCAGCTTTTTTTTTTTTTTTCTTTCTTTCTGGGGTTGTGCCTATAATCATGGTTTGGCAACGTTCTA ATCTCTACAGGCCCGTGACTGTCCCAAGAAGGGCACTCCCACCTGGTATGCTTAACTTGCACTGTCCATTTTCCT CTTGTTGTAAACATTATTGACTAAACTCGATAGCTACAACTGTGGTGGTATGTCTCCCGACCTTGTCTCCTCTAC ATTAGTGTCCAATCTCCCTATCCCTTCTCGTTCACTGGCCTATTTTCATTGCGCCTTTTTCCGTTGATCCTCAGC CACTCTATCTAACCGCACCTTGGTACCATTACAGGACAGGGACACGTCAGTAAGTCAAACCAGCGAATTCTCCAG TTGCTTCTCCGTCTTTTCATTATGCTTTTTCCTTTTTCTTTCGGAGATGCTAAGAAGCCTATCATCCAGGCCGTG AATGCACTGTAGCTCCCAAGGAGAAGTCCTGCTACCGCTGCGGTGGTGTGGGCCACATCTCCCGCGAGTGCCAGG CTAGCCCCGCCGAGGGTTTCGGTGCTGCTGCTGGTGGTGGCCAGGAGTGCTACAAGTGCGGCCGTGTCGGTCACA TTGCTAGGAATTGCCCTCAGAGCGGCGGCTACAGTGGTGGCTTTGGCGGTCGTCAGCAGACTTGCTACTCTTGCG GTGGTTTCGGACACATGGCTCGCGACTGCACCAATGGTCAGAAGTGCTACAACTGTAGGTTACCGCTCCCTTCAC AATCCCTCAGGTTCAGACACGCTAACAATATGCTTCTAGGCGGTGAGGTTGGCCACGTCTCTCGCGACTGCCCTA CGGAGGCCAAGGGCGAGCGGGTGTGCTACAACTGCAAGCAGCCTGGCCACGTCCAGGCCGCTTGCCCTAACTAA |