© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g5009.t1 |
| Gene name | |
| Location | scaffold_027:24216..26554 |
| Strand | + |
| Gene length (bp) | 2338 |
| Transcript length (bp) | 2268 |
| Coding sequence length (bp) | 2268 |
| Protein length (aa) | 756 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04515 | Choline_transpo | Plasma-membrane choline transporter | 9.6E-24 | 397 | 720 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 280 | 302 | 22 |
| 2 | 325 | 347 | 22 |
| 3 | 354 | 376 | 22 |
| 4 | 391 | 410 | 19 |
| 5 | 437 | 459 | 22 |
| 6 | 479 | 501 | 22 |
| 7 | 532 | 554 | 22 |
| 8 | 645 | 664 | 19 |
| 9 | 685 | 707 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g5009.t1 MFSEYASRFLAQSQSRVVNHPEDPRRKGHERLLQQPRNSLLPSSRSFFHRNAADPYQPAGSQLSSFPFSSRVVSQ PAPLFYSATDEFREEDDEVEHEREIADFYALQKSRRQFGSSYLRESSEIGDDNDSASSKEQKPPYTRGKGIWSSW RDAETSDRAQELRAEYDGEPRGTGDSVQAERNRSRLRGNLVDVQLEDTLASDVGRDRADSPVFGDDKPPSIQRFR EQPQSRTGNLGIDSVLLPIDSDNAVLPETSQPPGMSRPYRMSTPPIGASSPTHDAFWGQLFLISVASLFATSFLV YLHTSPPSGDKSKWGDTVYLTIHSSFYLLGTYTVASIFISLLWLALLRSYVRPLVYAVIIAVPIILYSFFLYPFI SSFGGTWHGSSVQDKVMRCGSIVPFVLASAWIYNVVRGRHAIGRAVDILEFACRILAVNPELLALGLGALVLIVL WTWLWMLIFTRVFLEGHLSRSSLFVVDSSGWCLGVYYVLVYAWSLGVIAGIRRTVTAAAVSQWYFHRYTMPAPTS RQIVQAATLHSVTTLFGTICLSSLLALMIRVPLLLLPGRIASLLSFCAYSFVPTPITALTDPLTLTYASIHSQPL TVSARGLVQMTNLTPSIATTSLHPRSFSWSREHSGALLPYRLSKLILHAARLMMSLALGFGGWVSTARSLSVMGT NGSIRGSMYAYMVGFIAGTIGWSVLGAIEGVIADIVDASIICWSSEVGAYGREARYCREAGWLFGQESGSVSRNT RFEDA* |
| Coding | >Ani_SJS100_1|g5009.t1 ATGTTCTCCGAATATGCCTCCCGTTTCCTCGCACAGTCCCAGTCACGGGTTGTGAACCATCCAGAAGACCCCCGA AGAAAGGGACATGAACGTCTCTTGCAACAACCTCGGAATTCTCTTTTGCCCTCCTCGCGCTCATTCTTCCACAGG AATGCGGCCGACCCATATCAACCTGCCGGTTCTCAACTATCAAGCTTCCCTTTTAGTTCGAGGGTTGTGTCTCAG CCTGCGCCTCTCTTCTACAGCGCTACTGACGAATTTCGAGAGGAGGATGATGAGGTTGAGCATGAGCGAGAGATT GCCGACTTCTATGCCTTACAAAAATCACGGCGTCAATTTGGGAGCAGCTACCTTAGGGAGTCTTCAGAGATTGGC GACGATAACGACTCTGCCAGCTCGAAGGAACAAAAGCCTCCCTATACTAGGGGGAAGGGCATTTGGAGCTCCTGG CGCGACGCCGAAACTAGCGACAGAGCGCAAGAGTTGCGTGCTGAATACGACGGGGAGCCACGCGGAACGGGAGAT TCGGTTCAAGCAGAGCGAAACAGAAGCAGGCTCAGGGGAAACCTAGTTGACGTTCAACTGGAAGATACACTGGCA TCCGATGTTGGCCGCGACCGGGCTGACTCTCCCGTATTTGGTGATGATAAACCGCCCTCCATTCAACGGTTTCGA GAGCAGCCACAGTCACGAACGGGCAATCTCGGAATAGACTCAGTCCTCTTGCCTATAGATTCAGATAACGCAGTA TTGCCAGAAACATCCCAACCGCCAGGCATGTCACGGCCATACCGAATGTCGACTCCACCGATAGGCGCTAGCTCT CCAACTCATGATGCCTTCTGGGGTCAGTTATTTCTCATATCCGTGGCCTCTCTCTTCGCTACGTCATTTCTTGTC TACCTCCACACTTCACCTCCTTCTGGTGACAAGTCGAAATGGGGTGACACGGTCTACTTGACCATCCACAGTTCA TTTTACCTGCTGGGTACCTATACTGTCGCGTCGATATTCATATCTCTGCTCTGGCTGGCATTATTACGTTCCTAC GTACGTCCATTGGTCTACGCTGTCATCATCGCCGTTCCCATAATCCTGTATTCCTTCTTTCTCTACCCCTTTATC TCGAGTTTTGGAGGTACGTGGCACGGATCGAGTGTTCAGGACAAAGTCATGAGATGCGGGTCTATTGTTCCGTTT GTTTTGGCCAGTGCATGGATTTATAATGTCGTTCGAGGTCGCCACGCTATAGGGAGGGCCGTCGACATACTCGAA TTTGCATGCCGCATCCTCGCCGTGAATCCAGAGCTTCTAGCTTTGGGGCTTGGTGCCCTCGTTCTCATTGTCTTA TGGACCTGGCTATGGATGCTCATATTTACGCGAGTGTTTTTGGAAGGTCATCTTTCTCGGTCCAGCCTTTTTGTT GTCGATTCAAGCGGCTGGTGCTTAGGAGTCTACTATGTGCTCGTTTACGCATGGTCACTGGGAGTCATCGCTGGT ATTCGACGTACAGTCACAGCTGCCGCCGTGAGCCAGTGGTATTTTCACCGCTATACGATGCCGGCGCCGACGTCC AGGCAAATAGTCCAGGCCGCAACTCTGCACTCCGTTACAACCCTTTTTGGTACAATTTGCCTATCGAGCCTCCTG GCTTTAATGATCCGCGTCCCGCTTTTGTTGCTTCCCGGTCGCATCGCCTCCCTTTTGAGTTTCTGCGCCTATTCG TTTGTCCCAACTCCTATAACTGCCCTTACGGACCCTCTTACCCTCACATATGCTTCCATTCATTCCCAGCCGCTT ACAGTGTCCGCTCGTGGCCTGGTGCAGATGACAAACCTGACGCCCTCCATAGCGACGACTTCTTTACACCCACGG TCGTTCTCTTGGTCTCGTGAGCATTCTGGAGCTCTTCTCCCTTACCGACTTTCCAAGCTCATCCTGCATGCTGCT CGTCTCATGATGTCTCTTGCGCTTGGGTTTGGTGGCTGGGTGAGCACTGCCCGGAGCCTAAGTGTGATGGGTACC AACGGTTCAATCCGTGGAAGCATGTATGCCTATATGGTTGGGTTCATTGCTGGGACGATTGGTTGGAGTGTGTTG GGAGCAATTGAAGGTGTGATTGCAGATATTGTCGATGCATCAATCATTTGTTGGAGTAGCGAAGTTGGAGCCTAC GGGCGAGAGGCAAGGTACTGTCGGGAAGCTGGCTGGCTCTTCGGCCAAGAGTCTGGTTCTGTTTCCAGGAATACG CGCTTTGAGGATGCATGA |
| Transcript | >Ani_SJS100_1|g5009.t1 ATGTTCTCCGAATATGCCTCCCGTTTCCTCGCACAGTCCCAGTCACGGGTTGTGAACCATCCAGAAGACCCCCGA AGAAAGGGACATGAACGTCTCTTGCAACAACCTCGGAATTCTCTTTTGCCCTCCTCGCGCTCATTCTTCCACAGG AATGCGGCCGACCCATATCAACCTGCCGGTTCTCAACTATCAAGCTTCCCTTTTAGTTCGAGGGTTGTGTCTCAG CCTGCGCCTCTCTTCTACAGCGCTACTGACGAATTTCGAGAGGAGGATGATGAGGTTGAGCATGAGCGAGAGATT GCCGACTTCTATGCCTTACAAAAATCACGGCGTCAATTTGGGAGCAGCTACCTTAGGGAGTCTTCAGAGATTGGC GACGATAACGACTCTGCCAGCTCGAAGGAACAAAAGCCTCCCTATACTAGGGGGAAGGGCATTTGGAGCTCCTGG CGCGACGCCGAAACTAGCGACAGAGCGCAAGAGTTGCGTGCTGAATACGACGGGGAGCCACGCGGAACGGGAGAT TCGGTTCAAGCAGAGCGAAACAGAAGCAGGCTCAGGGGAAACCTAGTTGACGTTCAACTGGAAGATACACTGGCA TCCGATGTTGGCCGCGACCGGGCTGACTCTCCCGTATTTGGTGATGATAAACCGCCCTCCATTCAACGGTTTCGA GAGCAGCCACAGTCACGAACGGGCAATCTCGGAATAGACTCAGTCCTCTTGCCTATAGATTCAGATAACGCAGTA TTGCCAGAAACATCCCAACCGCCAGGCATGTCACGGCCATACCGAATGTCGACTCCACCGATAGGCGCTAGCTCT CCAACTCATGATGCCTTCTGGGGTCAGTTATTTCTCATATCCGTGGCCTCTCTCTTCGCTACGTCATTTCTTGTC TACCTCCACACTTCACCTCCTTCTGGTGACAAGTCGAAATGGGGTGACACGGTCTACTTGACCATCCACAGTTCA TTTTACCTGCTGGGTACCTATACTGTCGCGTCGATATTCATATCTCTGCTCTGGCTGGCATTATTACGTTCCTAC GTACGTCCATTGGTCTACGCTGTCATCATCGCCGTTCCCATAATCCTGTATTCCTTCTTTCTCTACCCCTTTATC TCGAGTTTTGGAGGTACGTGGCACGGATCGAGTGTTCAGGACAAAGTCATGAGATGCGGGTCTATTGTTCCGTTT GTTTTGGCCAGTGCATGGATTTATAATGTCGTTCGAGGTCGCCACGCTATAGGGAGGGCCGTCGACATACTCGAA TTTGCATGCCGCATCCTCGCCGTGAATCCAGAGCTTCTAGCTTTGGGGCTTGGTGCCCTCGTTCTCATTGTCTTA TGGACCTGGCTATGGATGCTCATATTTACGCGAGTGTTTTTGGAAGGTCATCTTTCTCGGTCCAGCCTTTTTGTT GTCGATTCAAGCGGCTGGTGCTTAGGAGTCTACTATGTGCTCGTTTACGCATGGTCACTGGGAGTCATCGCTGGT ATTCGACGTACAGTCACAGCTGCCGCCGTGAGCCAGTGGTATTTTCACCGCTATACGATGCCGGCGCCGACGTCC AGGCAAATAGTCCAGGCCGCAACTCTGCACTCCGTTACAACCCTTTTTGGTACAATTTGCCTATCGAGCCTCCTG GCTTTAATGATCCGCGTCCCGCTTTTGTTGCTTCCCGGTCGCATCGCCTCCCTTTTGAGTTTCTGCGCCTATTCG TTTGTCCCAACTCCTATAACTGCCCTTACGGACCCTCTTACCCTCACATATGCTTCCATTCATTCCCAGCCGCTT ACAGTGTCCGCTCGTGGCCTGGTGCAGATGACAAACCTGACGCCCTCCATAGCGACGACTTCTTTACACCCACGG TCGTTCTCTTGGTCTCGTGAGCATTCTGGAGCTCTTCTCCCTTACCGACTTTCCAAGCTCATCCTGCATGCTGCT CGTCTCATGATGTCTCTTGCGCTTGGGTTTGGTGGCTGGGTGAGCACTGCCCGGAGCCTAAGTGTGATGGGTACC AACGGTTCAATCCGTGGAAGCATGTATGCCTATATGGTTGGGTTCATTGCTGGGACGATTGGTTGGAGTGTGTTG GGAGCAATTGAAGGTGTGATTGCAGATATTGTCGATGCATCAATCATTTGTTGGAGTAGCGAAGTTGGAGCCTAC GGGCGAGAGGCAAGGTACTGTCGGGAAGCTGGCTGGCTCTTCGGCCAAGAGTCTGGTTCTGTTTCCAGGAATACG CGCTTTGAGGATGCATGA |
| Gene | >Ani_SJS100_1|g5009.t1 ATGTTCTCCGAATGTATGATTATCACTCTGCTGTCCGTCTCTTATAAATTGACCAAGCTTTTCATCGCTCACTGT CTGCCCAGATGCCTCCCGTTTCCTCGCACAGTCCCAGTCACGGGTTGTGAACCATCCAGAAGACCCCCGAAGAAA GGGACATGAACGTCTCTTGCAACAACCTCGGAATTCTCTTTTGCCCTCCTCGCGCTCATTCTTCCACAGGAATGC GGCCGACCCATATCAACCTGCCGGTTCTCAACTATCAAGCTTCCCTTTTAGTTCGAGGGTTGTGTCTCAGCCTGC GCCTCTCTTCTACAGCGCTACTGACGAATTTCGAGAGGAGGATGATGAGGTTGAGCATGAGCGAGAGATTGCCGA CTTCTATGCCTTACAAAAATCACGGCGTCAATTTGGGAGCAGCTACCTTAGGGAGTCTTCAGAGATTGGCGACGA TAACGACTCTGCCAGCTCGAAGGAACAAAAGCCTCCCTATACTAGGGGGAAGGGCATTTGGAGCTCCTGGCGCGA CGCCGAAACTAGCGACAGAGCGCAAGAGTTGCGTGCTGAATACGACGGGGAGCCACGCGGAACGGGAGATTCGGT TCAAGCAGAGCGAAACAGAAGCAGGCTCAGGGGAAACCTAGTTGACGTTCAACTGGAAGATACACTGGCATCCGA TGTTGGCCGCGACCGGGCTGACTCTCCCGTATTTGGTGATGATAAACCGCCCTCCATTCAACGGTTTCGAGAGCA GCCACAGTCACGAACGGGCAATCTCGGAATAGACTCAGTCCTCTTGCCTATAGATTCAGATAACGCAGTATTGCC AGAAACATCCCAACCGCCAGGCATGTCACGGCCATACCGAATGTCGACTCCACCGATAGGCGCTAGCTCTCCAAC TCATGATGCCTTCTGGGGTCAGTTATTTCTCATATCCGTGGCCTCTCTCTTCGCTACGTCATTTCTTGTCTACCT CCACACTTCACCTCCTTCTGGTGACAAGTCGAAATGGGGTGACACGGTCTACTTGACCATCCACAGTTCATTTTA CCTGCTGGGTACCTATACTGTCGCGTCGATATTCATATCTCTGCTCTGGCTGGCATTATTACGTTCCTACGTACG TCCATTGGTCTACGCTGTCATCATCGCCGTTCCCATAATCCTGTATTCCTTCTTTCTCTACCCCTTTATCTCGAG TTTTGGAGGTACGTGGCACGGATCGAGTGTTCAGGACAAAGTCATGAGATGCGGGTCTATTGTTCCGTTTGTTTT GGCCAGTGCATGGATTTATAATGTCGTTCGAGGTCGCCACGCTATAGGGAGGGCCGTCGACATACTCGAATTTGC ATGCCGCATCCTCGCCGTGAATCCAGAGCTTCTAGCTTTGGGGCTTGGTGCCCTCGTTCTCATTGTCTTATGGAC CTGGCTATGGATGCTCATATTTACGCGAGTGTTTTTGGAAGGTCATCTTTCTCGGTCCAGCCTTTTTGTTGTCGA TTCAAGCGGCTGGTGCTTAGGAGTCTACTATGTGCTCGTTTACGCATGGTCACTGGGAGTCATCGCTGGTATTCG ACGTACAGTCACAGCTGCCGCCGTGAGCCAGTGGTATTTTCACCGCTATACGATGCCGGCGCCGACGTCCAGGCA AATAGTCCAGGCCGCAACTCTGCACTCCGTTACAACCCTTTTTGGTACAATTTGCCTATCGAGCCTCCTGGCTTT AATGATCCGCGTCCCGCTTTTGTTGCTTCCCGGTCGCATCGCCTCCCTTTTGAGTTTCTGCGCCTATTCGTTTGT CCCAACTCCTATAACTGCCCTTACGGACCCTCTTACCCTCACATATGCTTCCATTCATTCCCAGCCGCTTACAGT GTCCGCTCGTGGCCTGGTGCAGATGACAAACCTGACGCCCTCCATAGCGACGACTTCTTTACACCCACGGTCGTT CTCTTGGTCTCGTGAGCATTCTGGAGCTCTTCTCCCTTACCGACTTTCCAAGCTCATCCTGCATGCTGCTCGTCT CATGATGTCTCTTGCGCTTGGGTTTGGTGGCTGGGTGAGCACTGCCCGGAGCCTAAGTGTGATGGGTACCAACGG TTCAATCCGTGGAAGCATGTATGCCTATATGGTTGGGTTCATTGCTGGGACGATTGGTTGGAGTGTGTTGGGAGC AATTGAAGGTGTGATTGCAGATATTGTCGATGCATCAATCATTTGTTGGAGTAGCGAAGTTGGAGCCTACGGGCG AGAGGCAAGGTACTGTCGGGAAGCTGGCTGGCTCTTCGGCCAAGAGTCTGGTTCTGTTTCCAGGAATACGCGCTT TGAGGATGCATGA |