© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4984.t1 |
| Gene name | |
| Location | scaffold_026:354964..356469 |
| Strand | - |
| Gene length (bp) | 1505 |
| Transcript length (bp) | 1281 |
| Coding sequence length (bp) | 1281 |
| Protein length (aa) | 427 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 1.8E-10 | 361 | 405 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 2.8E-09 | 362 | 390 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 7.4E-08 | 362 | 404 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 4.4E-06 | 362 | 404 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 211 | 233 | 22 |
| Orthofinder run ID | 3 |
| Orthogroup | 5268 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4984.t1 MTAKSLTTVATLFADPTNTTIALNESSIFSLKLDDTVQTLSKQKAPDQGSIQGLLFVPSLGNQNPCNNATEPYIP DNVTRLQGVTPFDGRVIGLAPWISDECSQAFLNVSQGTVPAALLFFLPSNDDKKPPAANDPAWQLGGSASWQSQS NFPVYGIPGAAGATLMEQLSRDGSVPDPDDQDNLTALSSSGASRLIAVIDIDSGAKKMPSIWGFILAILGTVLVL TIILLLFYQLVHRRHQRELQRRLEAGEADLEQLAQLHIKVPPEFLETMPIYIYMGDGDDNESTHENSTPGNLPRI TEHSAEDIDPKTPTVAIREADNEAEKAIDGESIRRPSQATIAGHPDAYVRHKNRLSRQQTTCAICLDDFEPDLSA VRELPCGHIYHPPCIDTSLTQSSSLCPLCKKSVLPSSWFRFPPEDPWLQPH* |
| Coding | >Ani_SJS100_1|g4984.t1 ATGACTGCCAAATCGCTCACCACGGTTGCGACGCTCTTTGCTGATCCGACAAACACCACCATCGCTCTGAACGAG AGTTCGATCTTTTCTCTCAAGCTTGACGATACCGTTCAAACGCTGTCGAAACAAAAAGCCCCGGACCAAGGCTCA ATTCAGGGACTTCTCTTTGTTCCCAGCCTCGGAAACCAAAATCCATGCAACAATGCCACTGAACCGTATATCCCG GACAACGTCACCCGCCTCCAAGGCGTCACGCCGTTCGACGGCCGTGTGATCGGGCTGGCACCTTGGATAAGCGAC GAATGTTCGCAGGCGTTTCTCAATGTCTCGCAGGGGACCGTGCCGGCCGCGCTGCTCTTTTTTCTGCCGTCCAAC GATGACAAAAAGCCGCCAGCGGCAAATGACCCGGCCTGGCAGCTGGGAGGAAGCGCTAGCTGGCAATCGCAGAGC AACTTTCCGGTGTACGGAATCCCCGGCGCGGCGGGTGCTACCTTGATGGAACAACTGTCACGCGACGGGAGTGTG CCCGATCCCGATGACCAAGACAACCTAACTGCATTGTCGTCGTCAGGGGCTAGCAGATTGATAGCGGTCATAGAT ATAGATAGTGGCGCAAAGAAGATGCCCAGTATATGGGGGTTCATTCTCGCCATTCTCGGGACGGTCCTCGTACTT ACTATTATCCTACTTTTATTCTACCAACTGGTGCACAGGCGGCATCAGCGGGAGCTTCAGCGCCGCCTGGAAGCC GGAGAAGCAGACTTGGAGCAGCTAGCCCAGCTTCATATCAAAGTTCCGCCAGAATTCTTGGAGACGATGCCAATC TACATCTACATGGGCGATGGTGACGACAACGAATCGACCCATGAGAATTCAACACCTGGGAATCTACCACGGATC ACCGAACACTCTGCTGAAGACATAGACCCCAAAACACCCACCGTCGCAATTCGTGAGGCGGACAATGAGGCGGAA AAAGCAATAGACGGCGAGTCCATCAGACGACCCTCGCAGGCGACAATAGCAGGCCACCCAGACGCCTATGTACGG CACAAAAACCGACTCAGCCGACAGCAAACGACGTGCGCGATCTGCCTGGATGATTTCGAGCCGGATTTATCAGCA GTGCGTGAGCTGCCGTGCGGACACATCTACCACCCACCATGCATCGATACATCCCTAACGCAGAGCAGCAGTCTC TGCCCGCTATGCAAGAAGAGCGTGCTCCCAAGCAGCTGGTTCAGATTTCCACCAGAAGACCCATGGCTGCAACCT CACTAG |
| Transcript | >Ani_SJS100_1|g4984.t1 ATGACTGCCAAATCGCTCACCACGGTTGCGACGCTCTTTGCTGATCCGACAAACACCACCATCGCTCTGAACGAG AGTTCGATCTTTTCTCTCAAGCTTGACGATACCGTTCAAACGCTGTCGAAACAAAAAGCCCCGGACCAAGGCTCA ATTCAGGGACTTCTCTTTGTTCCCAGCCTCGGAAACCAAAATCCATGCAACAATGCCACTGAACCGTATATCCCG GACAACGTCACCCGCCTCCAAGGCGTCACGCCGTTCGACGGCCGTGTGATCGGGCTGGCACCTTGGATAAGCGAC GAATGTTCGCAGGCGTTTCTCAATGTCTCGCAGGGGACCGTGCCGGCCGCGCTGCTCTTTTTTCTGCCGTCCAAC GATGACAAAAAGCCGCCAGCGGCAAATGACCCGGCCTGGCAGCTGGGAGGAAGCGCTAGCTGGCAATCGCAGAGC AACTTTCCGGTGTACGGAATCCCCGGCGCGGCGGGTGCTACCTTGATGGAACAACTGTCACGCGACGGGAGTGTG CCCGATCCCGATGACCAAGACAACCTAACTGCATTGTCGTCGTCAGGGGCTAGCAGATTGATAGCGGTCATAGAT ATAGATAGTGGCGCAAAGAAGATGCCCAGTATATGGGGGTTCATTCTCGCCATTCTCGGGACGGTCCTCGTACTT ACTATTATCCTACTTTTATTCTACCAACTGGTGCACAGGCGGCATCAGCGGGAGCTTCAGCGCCGCCTGGAAGCC GGAGAAGCAGACTTGGAGCAGCTAGCCCAGCTTCATATCAAAGTTCCGCCAGAATTCTTGGAGACGATGCCAATC TACATCTACATGGGCGATGGTGACGACAACGAATCGACCCATGAGAATTCAACACCTGGGAATCTACCACGGATC ACCGAACACTCTGCTGAAGACATAGACCCCAAAACACCCACCGTCGCAATTCGTGAGGCGGACAATGAGGCGGAA AAAGCAATAGACGGCGAGTCCATCAGACGACCCTCGCAGGCGACAATAGCAGGCCACCCAGACGCCTATGTACGG CACAAAAACCGACTCAGCCGACAGCAAACGACGTGCGCGATCTGCCTGGATGATTTCGAGCCGGATTTATCAGCA GTGCGTGAGCTGCCGTGCGGACACATCTACCACCCACCATGCATCGATACATCCCTAACGCAGAGCAGCAGTCTC TGCCCGCTATGCAAGAAGAGCGTGCTCCCAAGCAGCTGGTTCAGATTTCCACCAGAAGACCCATGGCTGCAACCT CACTAG |
| Gene | >Ani_SJS100_1|g4984.t1 ATGAGTATGCTCCCCTTGCTTCAGAGAATGCTGCACATTCCTTCGATCGTGACTGCCTGTTCATCCTTCCGTGGC TGTCTCACTGTCCATACCTGAGCGATCGCTGATATGCCTCTTATCTAGCTGCCAAATCGCTCACCACGGTTGCGA CGCTCTTTGCTGATCCGACAAACACCACCATCGCTCTGAACGTGCGTCAGACGCCCGTGAAATTCCGTGTCCGAG AAGCTGACTGTGCCCCTAGGAGAGTTCGATCTTTTCTCTCAAGCTTGACGATACCGTTCAAACGCTGTCGAAACA AAAAGCCCCGGACCAAGGCTCAATTCAGGGACTTCTCTTTGTTCCCAGCCTCGGAAACCAAAATCCATGCAACAA TGCCACTGAACCGTATATCCCGGACAACGTCACCCGCCTCCAAGGCGTCACGCCGTTCGACGGCCGTGTGATCGG GCTGGCACCTTGGATAAGCGACGAATGTTCGCAGGCGTTTCTCAATGTCTCGCAGGGGACCGTGCCGGCCGCGCT GCTCTTTTTTCTGCCGTCCAACGATGACAAAAAGCCGCCAGCGGCAAATGACCCGGCCTGGCAGCTGGGAGGAAG CGCTAGCTGGCAATCGCAGAGCAACTTTCCGGTGTACGGAATCCCCGGCGCGGCGGGTGCTACCTTGATGGAACA ACTGTCACGCGACGGGAGTGTGCCCGATCCCGATGACCAAGACAACCTAACTGCATTGTCGTCGTCAGGGGCTAG CAGATTGATAGCGGTCATAGATATAGGTAGGCTTGTGTTGTCGTGACATTGCCAGTAAGAAGCTGACATATGGCT CAGATAGTGGCGCAAAGAAGATGCCCAGTATATGGGGGTTCATTCTCGCCATTCTCGGGACGGTCCTCGTACTTA CTATTATCCTACTTTTATTCTACCAACTGGTGCACAGGCGGCATCAGCGGGAGCTTCAGCGCCGCCTGGAAGCCG GAGAAGCAGACTTGGAGCAGCTAGCCCAGCTTCATATCAAAGTTCCGCCAGAATTCTTGGAGACGATGCCAATCT ACATCTACATGGGCGATGGTGACGACAACGAATCGACCCATGAGAATTCAACACCTGGGAATCTACCACGGATCA CCGAACACTCTGCTGAAGACATAGACCCCAAAACACCCACCGTCGCAATTCGTGAGGCGGACAATGAGGCGGAAA AAGCAATAGACGGCGAGTCCATCAGACGACCCTCGCAGGCGACAATAGCAGGCCACCCAGACGCCTATGTACGGC ACAAAAACCGACTCAGCCGACAGCAAACGACGTGCGCGATCTGCCTGGATGATTTCGAGCCGGATTTATCAGCAG TGCGTGAGCTGCCGTGCGGACACATCTACCACCCACCATGCATCGATACATCCCTAACGCAGAGCAGCAGTCTCT GCCCGCTATGCAAGAAGAGCGTGCTCCCAAGCAGCTGGTTCAGATTTCCACCAGAAGACCCATGGCTGCAACCTC ACTAG |