© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4974.t1 |
| Gene name | |
| Location | scaffold_026:317993..318793 |
| Strand | + |
| Gene length (bp) | 800 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04622 | ERG2_Sigma1R | ERG2 and Sigma1 receptor like protein | 6.8E-99 | 9 | 214 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 21 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4974.t1 MRCASFAVALLALFTGLYSYLNARLEQFYIFDPSHLHDLSQRAIAAHGNDTRSVVNFIVSELGEKVTDTHLNLDE EWVFNNAGGAMGAMYIIHASITEYLIIFGTAIGTEGHTGRHTADDYFNILQGTQLAYVPGSYEPEVYPQGSVHHL RRGEVKQYKMDESCFALEYARGWIPPMLFFGYADTFSSTLDFPTLWATSRITGREMISNLLKGKM* |
| Coding | >Ani_SJS100_1|g4974.t1 ATGCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCTCTACAGCTACCTGAACGCGCGCCTG GAGCAGTTCTACATCTTCGATCCCTCCCACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGAC ACTCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCACCGACACGCACCTGAACCTGGACGAG GAATGGGTCTTCAACAACGCCGGTGGTGCGATGGGGGCAATGTATATTATCCATGCTAGTATCACGGAGTACTTG ATCATTTTCGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACACGGCCGACGACTACTTCAACATTCTT CAGGGCACCCAGCTCGCCTACGTCCCTGGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACCTC CGCCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCTGGAGTACGCCCGTGGCTGGATTCCC CCGATGCTCTTCTTCGGATACGCCGATACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCAGA ATCACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGA |
| Transcript | >Ani_SJS100_1|g4974.t1 ATGCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCTCTACAGCTACCTGAACGCGCGCCTG GAGCAGTTCTACATCTTCGATCCCTCCCACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGAC ACTCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCACCGACACGCACCTGAACCTGGACGAG GAATGGGTCTTCAACAACGCCGGTGGTGCGATGGGGGCAATGTATATTATCCATGCTAGTATCACGGAGTACTTG ATCATTTTCGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACACGGCCGACGACTACTTCAACATTCTT CAGGGCACCCAGCTCGCCTACGTCCCTGGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACCTC CGCCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCTGGAGTACGCCCGTGGCTGGATTCCC CCGATGCTCTTCTTCGGATACGCCGATACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCAGA ATCACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGA |
| Gene | >Ani_SJS100_1|g4974.t1 ATGCGCTGCGCTAGCTTCGCCGTGGCCCTCCTGGCCCTTTTCACTGGTCTCTACAGCTACCTGAACGCGCGCCTG GAGCAGTTCTACATCTTCGATCCCTCCCACCTGCACGACCTGTCGCAGCGCGCCATTGCCGCTCATGGCAATGAC ACTCGCTCGGTGGTGAACTTCATCGTCTCCGAGCTGGGCGAGAAGGTCACCGACACGCACCTGAACCTGGACGAG GAATGGGTCTTCAACAACGCCGGTGGTGCGATGGGGGCAATGTATATTATCCATGCTAGTGCGTCCCCTCTTTTG CTCCATACCACCTCTATAATTATCTATAGTGCCTGAACTAAGCTTTGATTCTCCTATAGGTATCACGGAGTACTT GATCATTTTCGGTATGGCTTCCCCTGTATCCCGGATATTTTTATGCCCTCGATTGCACGAGCTAACTACTCTCTC CCTGTCCATTAGGCACCGCTATTGGTACTGAGGGCCACACTGGCCGTCACACGGCCGACGACTACTTCAACATTC TTCAGGGCACCCAGCTCGCCTACGTCCCTGGATCCTACGAGCCCGAGGTTTACCCCCAGGGTAGCGTGCACCACC TCCGCCGCGGTGAGGTCAAGCAGTACAAGATGGATGAGTCGTGCTTTGCTCTGGAGTACGCCCGTGGCTGGATTC CCCCGATGCTCTTCTTCGGATACGCCGATACCTTCTCCAGCACTCTCGACTTCCCGACTCTGTGGGCGACGTCCA GAATCACTGGTCGCGAGATGATCTCCAACCTGCTCAAGGGCAAGATGTGA |