© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4973.t1 |
| Gene name | |
| Location | scaffold_026:316083..316875 |
| Strand | - |
| Gene length (bp) | 792 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01670 | Glyco_hydro_12 | Glycosyl hydrolase family 12 | 2.5E-48 | 37 | 241 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000272 | polysaccharide catabolic process | Yes |
| GO:0008810 | cellulase activity | Yes |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016052 | carbohydrate catabolic process | No |
| GO:0005976 | polysaccharide metabolic process | No |
| GO:0009056 | catabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4973.t1 MKVLALSALLSLASAASISRRSDFCGQWDTATAGDFILYNDLWGEDNASSGSQCTGVDSASGNEIAWHTSWSWEG GSSDVKSYANAALQFTGTQLSSISSIPSTWKWTYSGSDIVADVAYDMFLGSTADASSDEYEIMVWLAALGGAGPI SSTGSTIATPTINGVTWDLYTGPNGDTTVYSFVAQSTTEDFSGDLNDFFTYLVDNEGVSDSLYLTTLEAGTEPFT GSDAELKVSEYSVSIE* |
| Coding | >Ani_SJS100_1|g4973.t1 ATGAAGGTTCTCGCTCTTTCCGCTCTTCTTTCCTTGGCTTCGGCCGCCTCTATCAGCCGCCGTAGCGACTTCTGC GGCCAATGGGATACCGCCACTGCCGGCGACTTCATCCTGTACAACGACCTCTGGGGTGAAGACAACGCCTCCAGC GGCTCCCAGTGCACCGGCGTCGACTCGGCCAGCGGCAACGAGATCGCCTGGCACACCAGCTGGTCCTGGGAGGGT GGCAGCAGTGACGTCAAGAGCTACGCCAACGCTGCTCTGCAGTTCACTGGTACTCAGCTGAGCTCCATCTCCAGC ATCCCCTCCACCTGGAAGTGGACATACTCTGGCTCCGACATCGTGGCCGACGTGGCCTACGACATGTTCCTGGGC TCGACCGCCGACGCCTCCTCCGATGAGTACGAGATCATGGTCTGGCTTGCTGCCCTGGGCGGTGCTGGCCCCATC TCGTCGACCGGCTCCACCATTGCCACCCCGACGATCAACGGCGTGACCTGGGACCTGTACACCGGCCCCAACGGC GACACCACCGTCTACAGCTTCGTCGCCCAGTCGACCACCGAGGACTTCTCCGGCGACCTGAACGACTTCTTCACC TACCTGGTGGACAACGAGGGTGTCTCTGACAGCCTGTACCTGACCACCCTTGAGGCGGGTACCGAGCCCTTCACC GGTAGCGACGCTGAGCTGAAGGTGTCCGAGTACTCCGTTTCCATCGAGTAA |
| Transcript | >Ani_SJS100_1|g4973.t1 ATGAAGGTTCTCGCTCTTTCCGCTCTTCTTTCCTTGGCTTCGGCCGCCTCTATCAGCCGCCGTAGCGACTTCTGC GGCCAATGGGATACCGCCACTGCCGGCGACTTCATCCTGTACAACGACCTCTGGGGTGAAGACAACGCCTCCAGC GGCTCCCAGTGCACCGGCGTCGACTCGGCCAGCGGCAACGAGATCGCCTGGCACACCAGCTGGTCCTGGGAGGGT GGCAGCAGTGACGTCAAGAGCTACGCCAACGCTGCTCTGCAGTTCACTGGTACTCAGCTGAGCTCCATCTCCAGC ATCCCCTCCACCTGGAAGTGGACATACTCTGGCTCCGACATCGTGGCCGACGTGGCCTACGACATGTTCCTGGGC TCGACCGCCGACGCCTCCTCCGATGAGTACGAGATCATGGTCTGGCTTGCTGCCCTGGGCGGTGCTGGCCCCATC TCGTCGACCGGCTCCACCATTGCCACCCCGACGATCAACGGCGTGACCTGGGACCTGTACACCGGCCCCAACGGC GACACCACCGTCTACAGCTTCGTCGCCCAGTCGACCACCGAGGACTTCTCCGGCGACCTGAACGACTTCTTCACC TACCTGGTGGACAACGAGGGTGTCTCTGACAGCCTGTACCTGACCACCCTTGAGGCGGGTACCGAGCCCTTCACC GGTAGCGACGCTGAGCTGAAGGTGTCCGAGTACTCCGTTTCCATCGAGTAA |
| Gene | >Ani_SJS100_1|g4973.t1 ATGAAGGTTCTCGCTCTTTCCGCTCTTCTTTCCTTGGCTTCGGCCGCCTCTATCAGCCGCCGTAGCGACTTCTGC GGCCAATGGGATACCGCCACTGCCGGCGACTTCATCCTGTACAACGACCTCTGGGGTGAAGACAACGCCTCCAGC GGCTCCCAGTGCACCGGCGTCGACTCGGCCAGCGGCAACGAGATCGCCTGGCACACCAGCTGGTCCTGGGAGGGT GGCAGCAGTGACGTCAAGAGCTACGCCAACGCTGCTCTGCAGTTCACTGGTACTCAGCTGAGCTCCATCTCCAGC ATCCCCTCCACCTGGAAGTGGACGTATGTTGCAGCCTAGACCTTCCGACCGACCGACCGTCAGGACGCATGCTGA CTTTTTGGGAATAGATACTCTGGCTCCGACATCGTGGCCGACGTGGCCTACGACATGTTCCTGGGCTCGACCGCC GACGCCTCCTCCGATGAGTACGAGATCATGGTCTGGCTTGCTGCCCTGGGCGGTGCTGGCCCCATCTCGTCGACC GGCTCCACCATTGCCACCCCGACGATCAACGGCGTGACCTGGGACCTGTACACCGGCCCCAACGGCGACACCACC GTCTACAGCTTCGTCGCCCAGTCGACCACCGAGGACTTCTCCGGCGACCTGAACGACTTCTTCACCTACCTGGTG GACAACGAGGGTGTCTCTGACAGCCTGTACCTGACCACCCTTGAGGCGGGTACCGAGCCCTTCACCGGTAGCGAC GCTGAGCTGAAGGTGTCCGAGTACTCCGTTTCCATCGAGTAA |