Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g4909.t1
Gene name
Location	scaffold_026:134667..135314
Strand	+
Gene length (bp)	647
Transcript length (bp)	486
Coding sequence length (bp)	486
Protein length (aa)	162

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00808	CBFD_NFYB_HMF	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	4.1E-21	1	55

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 67	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
Histone-like TF

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g4909.t1 MKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYR ETQSARGEHQNRPTSSGYGAGAPVGAPGPAGPGGRPMAPGAGFPDAADSANNIMNQSLDPSEQDTSAYGYPPMVG QPHNGTAGESY*
Coding	>Ani_SJS100_1\|g4909.t1 ATGAAGCTGGCTTTGCCTGAAAATGCCAAAATCGCAAAGGAGGCCAAGGAGTGTATGCAAGAGTGTGTGAGCGAG TTTATCTCATTCATCACTAGCGAAGCCTCCGAGAAATGCCAGCAAGAAAAGCGCAAGACCGTTAACGGGGAGGAC ATTCTATTCGCCATGACCTCCCTCGGGTTTGAAAACTATGCAGAGGCCCTTAAGATTTACCTGTCCAAGTATCGC GAGACCCAATCCGCCAGAGGCGAGCACCAGAACCGTCCAACAAGCAGTGGATATGGTGCTGGCGCGCCCGTAGGG GCCCCGGGACCTGCCGGTCCTGGTGGCCGTCCAATGGCACCAGGTGCAGGGTTTCCTGATGCTGCTGACAGCGCC AACAATATCATGAACCAGAGCTTGGACCCGTCTGAGCAGGACACTTCCGCTTATGGCTACCCCCCGATGGTCGGC CAGCCGCACAACGGCACCGCTGGTGAATCTTATTAG
Transcript	>Ani_SJS100_1\|g4909.t1 ATGAAGCTGGCTTTGCCTGAAAATGCCAAAATCGCAAAGGAGGCCAAGGAGTGTATGCAAGAGTGTGTGAGCGAG TTTATCTCATTCATCACTAGCGAAGCCTCCGAGAAATGCCAGCAAGAAAAGCGCAAGACCGTTAACGGGGAGGAC ATTCTATTCGCCATGACCTCCCTCGGGTTTGAAAACTATGCAGAGGCCCTTAAGATTTACCTGTCCAAGTATCGC GAGACCCAATCCGCCAGAGGCGAGCACCAGAACCGTCCAACAAGCAGTGGATATGGTGCTGGCGCGCCCGTAGGG GCCCCGGGACCTGCCGGTCCTGGTGGCCGTCCAATGGCACCAGGTGCAGGGTTTCCTGATGCTGCTGACAGCGCC AACAATATCATGAACCAGAGCTTGGACCCGTCTGAGCAGGACACTTCCGCTTATGGCTACCCCCCGATGGTCGGC CAGCCGCACAACGGCACCGCTGGTGAATCTTATTAG
Gene	>Ani_SJS100_1\|g4909.t1 ATGAAGCTGGCTTTGCCTGAAAATGCCAAAATCGCAAAGGAGGCCAAGGAGTGTATGCAAGAGTGTGTGAGCGAG TTTATCTCATTCATCACTAGCGAAGGTTGGTGCGACCACACCTGCTCTACAAGCTCTTTCACTGACGGAGTCTCG CACATTTGTCCGTAGCCTCCGAGAAATGCCAGCAAGAAAAGCGCAAGACCGTTAACGGGGAGGACATTCTATTCG CCATGACCTCCCTCGGGTTTGAAAACTATGCAGAGGCCCTTAAGATTTACCTGTCCAAGTATCGCGAGGTGAGAC CTGTGCAACGTCCCTAATCATGTTGCCTCTTTTTCGTAACAGGCGACATTGAGTTTCATGACGTATCCGGACGCT AATGATTCCTCTAGACCCAATCCGCCAGAGGCGAGCACCAGAACCGTCCAACAAGCAGTGGATATGGTGCTGGCG CGCCCGTAGGGGCCCCGGGACCTGCCGGTCCTGGTGGCCGTCCAATGGCACCAGGTGCAGGGTTTCCTGATGCTG CTGACAGCGCCAACAATATCATGAACCAGAGCTTGGACCCGTCTGAGCAGGACACTTCCGCTTATGGCTACCCCC CGATGGTCGGCCAGCCGCACAACGGCACCGCTGGTGAATCTTATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail