Protein ID | Ani_SJS100_1|g4901.t1 |
Gene name | |
Location | scaffold_026:96449..97038 |
Strand | - |
Gene length (bp) | 589 |
Transcript length (bp) | 399 |
Coding sequence length (bp) | 399 |
Protein length (aa) | 133 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08507 | COPI_assoc | COPI associated protein | 4.2E-32 | 5 | 126 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 34 | 56 | 22 |
3 | 63 | 85 | 22 |
4 | 89 | 111 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 5186 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g4901.t1 MDLSNIFRIVNIAVGVLMVLGGISQFFPASMSSIIVGIYVILFGLIVGGLEFLPNVPDYVYRYASFLFSFLGRGA FYIFVGCILLHDWVLRYIAGSIIGFIGLGYLALEFIPSIEPPSNMRENDQGWGAEQV* |
Coding | >Ani_SJS100_1|g4901.t1 ATGGATCTTTCTAACATCTTTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAA TTTTTCCCTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCATTGTCGGTGGGTTG GAATTCCTGCCCAACGTTCCCGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCT TTCTACATCTTCGTTGGATGTATCCTGCTGCACGACTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTC ATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCCCTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAG GGCTGGGGCGCCGAGCAGGTCTAA |
Transcript | >Ani_SJS100_1|g4901.t1 ATGGATCTTTCTAACATCTTTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAA TTTTTCCCTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCATTGTCGGTGGGTTG GAATTCCTGCCCAACGTTCCCGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCT TTCTACATCTTCGTTGGATGTATCCTGCTGCACGACTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTC ATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCCCTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAG GGCTGGGGCGCCGAGCAGGTCTAA |
Gene | >Ani_SJS100_1|g4901.t1 ATGGATCTTTCTAACATCTTGTACGTCGACGATGGCCTTGCATCGCATACATTTTTGGTGAAATGTACTCTAATT CCAACGGCTGCAGTCGAATTGTTAACATCGCCGTTGGCGTGTTGATGGTTCTCGGTGGTATCTCGCAATTTTTCC CTGCGTCTATGAGCTCCATCATCGTCGGCATTTACGTGATTCTCTTTGGTCTCAGTAAGTCTCAGATCAGGCAGC AGTATAGTGCATATGACAGCATACTTACACCATGGCTTTAGTTGTCGGTGGGTTGGAATTCCTGCCCAACGTTCC CGACTACGTTTACCGCTACGCGTCCTTCCTTTTCTCTTTCCTGGGACGTGGTGCTTGTAAGTCACACTATCCGTG ATTGCCGTAGATCGCTGCTAATGAGTTGACCACTTGCGTAGTCTACATCTTCGTTGGATGTATCCTGCTGCACGA CTGGGTTTTGCGGTACATTGCCGGCTCCATCATCGGATTCATCGGCCTGGGCTACCTGGCCCTGGAGTTCATTCC CTCCATCGAGCCCCCTTCCAACATGCGTGAAAACGACCAGGGCTGGGGCGCCGAGCAGGTCTAA |