© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4886.t1 |
| Gene name | |
| Location | scaffold_026:40839..42090 |
| Strand | + |
| Gene length (bp) | 1251 |
| Transcript length (bp) | 1182 |
| Coding sequence length (bp) | 1182 |
| Protein length (aa) | 394 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05625 | PAXNEB | PAXNEB protein | 3.8E-114 | 35 | 393 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0002098 | tRNA wobble uridine modification | Yes |
| GO:0033588 | elongator holoenzyme complex | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006396 | RNA processing | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006400 | tRNA modification | No |
| GO:0009987 | cellular process | No |
| GO:0008152 | metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0009451 | RNA modification | No |
| GO:0034660 | ncRNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4886.t1 MSFRKRNIGLSAGADRTGAVNANAQPQQPSATPELTPGVRPSPDDGRPTTSTGTPSLDNLLAGHGGLPIGKTLLI EENGTTDFAGALLRYYAAEGVVQDQKIHIVGMPEQWGRSLPGLLGPADAIDDKQDKRKGERMKIAWRYERLGEFG AGIAGSRAPSGDQSQSAADPNVDKRPAFCHAFDLTKRLTHPSIANLNYIPLAPSNEPLFVSIHKRLQAAIASCPP NTVHRILIPSLLNPTIYPPDSCQPDNLLPFLHSLRALMSAQGARVTAMITLPLSLFPRATGLVRWMELLSDGVIE LCPFPHSSDALATSGAATSQEEPPQGMLKVHRLPVLHERGGGSDQNIGQDWAFTLSRKKFEIKPFSLPPAEGDKE GQDAAVTGGMPKKADLEF* |
| Coding | >Ani_SJS100_1|g4886.t1 ATGTCTTTTCGCAAGAGAAATATTGGACTTTCGGCAGGCGCTGATCGCACCGGTGCCGTTAATGCTAACGCACAG CCGCAACAGCCTTCTGCGACGCCAGAATTGACTCCCGGAGTTCGCCCCTCCCCCGACGACGGGCGCCCGACTACT TCGACTGGTACTCCGTCGCTGGATAACCTTCTGGCTGGGCATGGAGGTCTTCCCATCGGGAAGACACTGCTGATT GAGGAGAATGGAACTACGGATTTTGCTGGTGCACTGCTAAGATACTATGCGGCAGAGGGTGTTGTGCAAGATCAA AAGATTCATATCGTGGGAATGCCTGAACAATGGGGAAGAAGTCTTCCGGGCTTGTTAGGCCCTGCTGATGCTATT GATGACAAGCAAGACAAACGGAAAGGCGAGCGCATGAAGATCGCTTGGCGATACGAGCGTCTGGGCGAGTTCGGA GCAGGAATTGCTGGTTCAAGAGCGCCCTCAGGAGACCAGAGCCAATCTGCCGCAGACCCAAACGTGGACAAGCGA CCAGCATTCTGCCATGCGTTTGACCTCACGAAACGTCTCACTCACCCATCCATAGCCAACCTGAACTATATACCC CTCGCGCCATCGAACGAGCCTTTGTTTGTGTCGATTCACAAACGTCTTCAAGCTGCAATTGCCTCTTGCCCGCCA AATACTGTCCATCGCATCCTCATCCCTTCGTTATTAAATCCCACGATATACCCACCCGATTCCTGCCAGCCCGAC AACCTTCTACCGTTCCTACACTCCCTCAGGGCTTTGATGAGCGCGCAGGGCGCACGGGTGACGGCGATGATCACT CTGCCCTTGTCCCTTTTCCCCCGCGCCACGGGACTTGTGCGATGGATGGAATTGTTGAGTGACGGTGTCATTGAA TTGTGTCCCTTCCCGCACTCTTCTGATGCTCTCGCAACCTCGGGTGCCGCTACTTCACAGGAGGAACCACCACAG GGCATGCTGAAGGTCCATCGACTACCAGTACTGCACGAACGTGGCGGTGGTAGCGATCAGAACATCGGACAGGAT TGGGCTTTCACGCTGAGCCGGAAGAAGTTCGAAATCAAGCCGTTCAGCTTACCGCCAGCTGAAGGAGACAAGGAG GGGCAGGATGCAGCGGTAACGGGTGGAATGCCAAAGAAGGCGGATCTTGAGTTCTAA |
| Transcript | >Ani_SJS100_1|g4886.t1 ATGTCTTTTCGCAAGAGAAATATTGGACTTTCGGCAGGCGCTGATCGCACCGGTGCCGTTAATGCTAACGCACAG CCGCAACAGCCTTCTGCGACGCCAGAATTGACTCCCGGAGTTCGCCCCTCCCCCGACGACGGGCGCCCGACTACT TCGACTGGTACTCCGTCGCTGGATAACCTTCTGGCTGGGCATGGAGGTCTTCCCATCGGGAAGACACTGCTGATT GAGGAGAATGGAACTACGGATTTTGCTGGTGCACTGCTAAGATACTATGCGGCAGAGGGTGTTGTGCAAGATCAA AAGATTCATATCGTGGGAATGCCTGAACAATGGGGAAGAAGTCTTCCGGGCTTGTTAGGCCCTGCTGATGCTATT GATGACAAGCAAGACAAACGGAAAGGCGAGCGCATGAAGATCGCTTGGCGATACGAGCGTCTGGGCGAGTTCGGA GCAGGAATTGCTGGTTCAAGAGCGCCCTCAGGAGACCAGAGCCAATCTGCCGCAGACCCAAACGTGGACAAGCGA CCAGCATTCTGCCATGCGTTTGACCTCACGAAACGTCTCACTCACCCATCCATAGCCAACCTGAACTATATACCC CTCGCGCCATCGAACGAGCCTTTGTTTGTGTCGATTCACAAACGTCTTCAAGCTGCAATTGCCTCTTGCCCGCCA AATACTGTCCATCGCATCCTCATCCCTTCGTTATTAAATCCCACGATATACCCACCCGATTCCTGCCAGCCCGAC AACCTTCTACCGTTCCTACACTCCCTCAGGGCTTTGATGAGCGCGCAGGGCGCACGGGTGACGGCGATGATCACT CTGCCCTTGTCCCTTTTCCCCCGCGCCACGGGACTTGTGCGATGGATGGAATTGTTGAGTGACGGTGTCATTGAA TTGTGTCCCTTCCCGCACTCTTCTGATGCTCTCGCAACCTCGGGTGCCGCTACTTCACAGGAGGAACCACCACAG GGCATGCTGAAGGTCCATCGACTACCAGTACTGCACGAACGTGGCGGTGGTAGCGATCAGAACATCGGACAGGAT TGGGCTTTCACGCTGAGCCGGAAGAAGTTCGAAATCAAGCCGTTCAGCTTACCGCCAGCTGAAGGAGACAAGGAG GGGCAGGATGCAGCGGTAACGGGTGGAATGCCAAAGAAGGCGGATCTTGAGTTCTAA |
| Gene | >Ani_SJS100_1|g4886.t1 ATGTCTTTTCGCAAGAGAAATATTGGACTTTCGGCAGGCGCTGATCGCACCGGTGCCGTTAATGCTAACGCACAG CCGCAACAGCCTTCTGCGACGCCAGAATTGACTCCCGGAGTTCGCCCCTCCCCCGACGACGGGCGCCCGACTACT TCGACTGGTACTCCGTCGCTGGATAACCTTCTGGCTGGGCATGGAGGTCTTCCCATCGGGAAGACACTGCTGATT GAGGAGAATGGAACTACGGATTTTGCTGGTGCACTGCTAAGATACTATGCGGCAGAGGGTGTTGTGCAAGATCAA AAGATTCATATCGTGGGAATGCCTGAACAATGGGGAAGAAGTCTTCCGGGCTTGTTAGGCCCTGCTGATGCTATT GATGACAAGCAAGACAAACGGAAAGGCGAGCGCATGAAGATCGCTTGGCGATACGAGCGTCTGGGCGAGTTCGGA GCAGGAATTGCTGGTTCAAGAGGTATACTATCTTGTCATATTGTCACTGTGAGAGTTTAGAGGTAGTGTGCTAAC AGACACGATTCTGCAGCGCCCTCAGGAGACCAGAGCCAATCTGCCGCAGACCCAAACGTGGACAAGCGACCAGCA TTCTGCCATGCGTTTGACCTCACGAAACGTCTCACTCACCCATCCATAGCCAACCTGAACTATATACCCCTCGCG CCATCGAACGAGCCTTTGTTTGTGTCGATTCACAAACGTCTTCAAGCTGCAATTGCCTCTTGCCCGCCAAATACT GTCCATCGCATCCTCATCCCTTCGTTATTAAATCCCACGATATACCCACCCGATTCCTGCCAGCCCGACAACCTT CTACCGTTCCTACACTCCCTCAGGGCTTTGATGAGCGCGCAGGGCGCACGGGTGACGGCGATGATCACTCTGCCC TTGTCCCTTTTCCCCCGCGCCACGGGACTTGTGCGATGGATGGAATTGTTGAGTGACGGTGTCATTGAATTGTGT CCCTTCCCGCACTCTTCTGATGCTCTCGCAACCTCGGGTGCCGCTACTTCACAGGAGGAACCACCACAGGGCATG CTGAAGGTCCATCGACTACCAGTACTGCACGAACGTGGCGGTGGTAGCGATCAGAACATCGGACAGGATTGGGCT TTCACGCTGAGCCGGAAGAAGTTCGAAATCAAGCCGTTCAGCTTACCGCCAGCTGAAGGAGACAAGGAGGGGCAG GATGCAGCGGTAACGGGTGGAATGCCAAAGAAGGCGGATCTTGAGTTCTAA |