© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4638.t1 |
| Gene name | |
| Location | scaffold_024:76667..78317 |
| Strand | + |
| Gene length (bp) | 1650 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00128 | Alpha-amylase | Alpha amylase, catalytic domain | 7.6E-44 | 68 | 366 |
| PF09260 | A_amylase_dom_C | Alpha-amylase, domain C | 7.5E-31 | 413 | 501 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0004556 | alpha-amylase activity | Yes |
| GO:0005509 | calcium ion binding | Yes |
| GO:0016052 | carbohydrate catabolic process | Yes |
| GO:0009056 | catabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0016160 | amylase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0008150 | biological_process | No |
| GO:0003824 | catalytic activity | No |
| GO:0046872 | metal ion binding | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0005488 | binding | No |
| GO:1901575 | organic substance catabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 29 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 525 | 547 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4638.t1 MFRKSASFLGQRLMAVCLLCWCVSLATAASTEEWKTRSIYQTMTDRFALTNGSTTAPCNTTVANYCGGSWQGTID KLDYIQGMGFDAIMISPVIKNIAGRSKDGEAYHGYWPLDLYEINSHFGTREELLKLSEEIHARGMYLLLDVVINN MAYMTDGEDPATTIDYNVFPQFNGSSYFHPYCLITNWNNYTDAQWCQTGDNYTALPDLYTEHTAVQDILMDWSKS VISNYSVDGLRIDAAKSLTPSFLPTYASTVGGFMTGEVMDSNATNVCKYQTDYLPSLPNYPLYYSMITAFLNGEP ATLLEEIATINDLCPDTFAMVNFIEDQDVDRWAYMNDDIMLAKTALTFMMLYDGIPLVYQGLEQAIAYSNRAALW LTDFDTNATLYKHIKKLNAIRKHAINLDSSYISSKTYPIYQGGSELAFWKGKNGRQVIMVLSTAGSGGSAYTLTL PVSYGASEVVTEVLNCVNYTVNTYSQLVVDMDKGEPRVFFPASMMPGSGLCGYNTSNVTYSELRLAAVGSSSSAG SHSVIPSAFSLLFMAIVAFLAFRI* |
| Coding | >Ani_SJS100_1|g4638.t1 ATGTTTCGAAAATCCGCTTCCTTCCTGGGCCAACGGCTCATGGCCGTTTGTCTCCTGTGCTGGTGCGTTTCGCTA GCGACCGCCGCAAGCACAGAAGAATGGAAGACGCGATCCATCTACCAGACGATGACGGATCGTTTTGCCCTCACT AATGGTTCGACCACCGCACCATGCAATACTACGGTAGCCAACTACTGTGGCGGGTCTTGGCAGGGGACGATCGAT AAGCTGGACTACATCCAAGGCATGGGGTTCGATGCCATCATGATCTCTCCCGTAATTAAAAACATTGCGGGGCGA TCTAAGGACGGTGAGGCCTACCATGGATACTGGCCTCTGGATCTATACGAGATCAATTCTCATTTCGGAACCCGG GAGGAACTGTTGAAGCTGAGCGAGGAGATCCACGCACGCGGCATGTACTTGCTGCTGGACGTCGTCATCAATAAT ATGGCTTACATGACGGACGGCGAGGATCCTGCGACAACCATTGACTACAATGTTTTCCCTCAGTTCAATGGATCT TCATACTTCCACCCCTACTGCCTTATTACGAACTGGAACAACTATACGGACGCGCAGTGGTGTCAGACTGGTGAC AATTATACTGCACTCCCAGATCTGTACACAGAACACACCGCGGTGCAGGACATCTTAATGGACTGGAGTAAATCG GTCATCAGCAATTACTCCGTCGACGGGCTACGAATCGACGCTGCCAAGTCCCTCACTCCCAGCTTTCTGCCTACA TATGCGAGTACCGTGGGCGGATTCATGACCGGCGAAGTCATGGATTCGAACGCCACCAACGTGTGCAAATATCAG ACGGATTACCTGCCAAGTCTTCCCAACTACCCCCTCTATTACTCCATGATCACAGCCTTCCTCAACGGCGAGCCT GCGACTTTGCTCGAGGAAATCGCGACGATCAATGATCTTTGCCCGGATACGTTCGCAATGGTCAACTTCATCGAA GATCAAGACGTTGACCGATGGGCCTACATGAATGACGACATTATGCTAGCTAAAACGGCACTGACCTTCATGATG CTCTACGACGGTATCCCCTTGGTCTACCAGGGTCTGGAGCAGGCCATTGCCTATTCCAACCGAGCGGCCTTGTGG TTGACGGATTTCGACACCAATGCGACGCTATATAAACACATCAAGAAACTCAATGCCATCCGCAAACATGCCATT AACCTTGATTCCAGCTACATCAGTTCGAAAACATATCCCATCTATCAAGGAGGTAGCGAGTTGGCTTTCTGGAAG GGCAAAAATGGACGCCAAGTCATCATGGTCTTATCTACGGCGGGGTCTGGTGGTTCGGCTTATACTCTGACACTA CCTGTGAGCTATGGGGCAAGCGAGGTGGTCACGGAAGTGCTGAACTGCGTCAACTATACGGTCAACACTTACAGT CAATTGGTCGTGGACATGGATAAGGGCGAGCCTCGGGTCTTCTTTCCCGCTTCGATGATGCCGGGGAGCGGGCTG TGTGGCTACAATACTTCTAATGTGACGTATTCTGAGCTGAGACTTGCTGCTGTGGGCTCTTCGTCGTCTGCTGGT AGCCACTCTGTCATACCGTCTGCTTTTTCTTTGCTTTTCATGGCGATAGTTGCATTTTTGGCATTCCGGATATAA |
| Transcript | >Ani_SJS100_1|g4638.t1 ATGTTTCGAAAATCCGCTTCCTTCCTGGGCCAACGGCTCATGGCCGTTTGTCTCCTGTGCTGGTGCGTTTCGCTA GCGACCGCCGCAAGCACAGAAGAATGGAAGACGCGATCCATCTACCAGACGATGACGGATCGTTTTGCCCTCACT AATGGTTCGACCACCGCACCATGCAATACTACGGTAGCCAACTACTGTGGCGGGTCTTGGCAGGGGACGATCGAT AAGCTGGACTACATCCAAGGCATGGGGTTCGATGCCATCATGATCTCTCCCGTAATTAAAAACATTGCGGGGCGA TCTAAGGACGGTGAGGCCTACCATGGATACTGGCCTCTGGATCTATACGAGATCAATTCTCATTTCGGAACCCGG GAGGAACTGTTGAAGCTGAGCGAGGAGATCCACGCACGCGGCATGTACTTGCTGCTGGACGTCGTCATCAATAAT ATGGCTTACATGACGGACGGCGAGGATCCTGCGACAACCATTGACTACAATGTTTTCCCTCAGTTCAATGGATCT TCATACTTCCACCCCTACTGCCTTATTACGAACTGGAACAACTATACGGACGCGCAGTGGTGTCAGACTGGTGAC AATTATACTGCACTCCCAGATCTGTACACAGAACACACCGCGGTGCAGGACATCTTAATGGACTGGAGTAAATCG GTCATCAGCAATTACTCCGTCGACGGGCTACGAATCGACGCTGCCAAGTCCCTCACTCCCAGCTTTCTGCCTACA TATGCGAGTACCGTGGGCGGATTCATGACCGGCGAAGTCATGGATTCGAACGCCACCAACGTGTGCAAATATCAG ACGGATTACCTGCCAAGTCTTCCCAACTACCCCCTCTATTACTCCATGATCACAGCCTTCCTCAACGGCGAGCCT GCGACTTTGCTCGAGGAAATCGCGACGATCAATGATCTTTGCCCGGATACGTTCGCAATGGTCAACTTCATCGAA GATCAAGACGTTGACCGATGGGCCTACATGAATGACGACATTATGCTAGCTAAAACGGCACTGACCTTCATGATG CTCTACGACGGTATCCCCTTGGTCTACCAGGGTCTGGAGCAGGCCATTGCCTATTCCAACCGAGCGGCCTTGTGG TTGACGGATTTCGACACCAATGCGACGCTATATAAACACATCAAGAAACTCAATGCCATCCGCAAACATGCCATT AACCTTGATTCCAGCTACATCAGTTCGAAAACATATCCCATCTATCAAGGAGGTAGCGAGTTGGCTTTCTGGAAG GGCAAAAATGGACGCCAAGTCATCATGGTCTTATCTACGGCGGGGTCTGGTGGTTCGGCTTATACTCTGACACTA CCTGTGAGCTATGGGGCAAGCGAGGTGGTCACGGAAGTGCTGAACTGCGTCAACTATACGGTCAACACTTACAGT CAATTGGTCGTGGACATGGATAAGGGCGAGCCTCGGGTCTTCTTTCCCGCTTCGATGATGCCGGGGAGCGGGCTG TGTGGCTACAATACTTCTAATGTGACGTATTCTGAGCTGAGACTTGCTGCTGTGGGCTCTTCGTCGTCTGCTGGT AGCCACTCTGTCATACCGTCTGCTTTTTCTTTGCTTTTCATGGCGATAGTTGCATTTTTGGCATTCCGGATATAA |
| Gene | >Ani_SJS100_1|g4638.t1 ATGTTTCGAAAATCCGCTTCCTTCCTGGGCCAACGGCTCATGGCCGTTTGTCTCCTGTGCTGGTGCGTTTCGCTA GCGACCGCCGCAAGCACAGAAGAATGGAAGACGCGATCCATCTACCAGACGATGACGGATCGTTTTGCCCTCACT AATGGTTCGACCACCGCACCATGCAATACTACGGTAGCCAACTACTGTGGCGGGTCTTGGCAGGGGACGATCGAT AAGCTGGACTACATCCAAGGCATGGGGTTCGATGCCATCATGATCTCTCCCGTAATTAAAAACATTGCGGGGCGA TCTAAGGACGGTGAGGCCTACCATGGATACTGGCCTCTGGATCTATACGAGATCAATTCTCATTTCGGAACCCGG GAGGAACTGTTGAAGCTGAGCGAGGAGATCCACGCACGCGGCATGTACTTGCTGCTGGACGTCGTCATCAATAAT ATGGCTTACATGACGGACGGCGAGGATCCTGCGACAACCATTGACTACAATGTTTTCCCTCAGTTCAATGGATCT TCATACTTCCACCCCTACTGCCTTATTACGAACTGGAACAACTATACGGACGCGCAGTGGTGTCAGACTGGTGAC AATTATACTGCACTCCCAGATCTGTACACAGAACACACCGCGGTGCAGGACATCTTAATGGACTGGAGTAAATCG GTCATCAGCAATTACTCCGTCGACGGGCTACGAATCGACGCTGCCAAGTCCCTCACTCCCAGCTTTCTGCCTACA TATGCGAGTACCGTGGGCGGATTCATGACCGGCGAAGTCATGGATTCGAACGCCACCAACGTGTGCAAATATCAG ACGGATTACCTGCCAAGTCTTCCCAACTACCCCCTCTATTACTCCATGATCACAGCCTTCCTCAACGGCGAGCCT GCGACTTTGCTCGAGGAAATCGCGACGATCAATGATCTTTGCCCGGATACGTTCGCAATGGTCAACTTCATCGAA GATCAAGACGTTGACCGATGGGCCTACATGAATGACGACATTATGCTAGCTAAAACGGCACTGACCTTCATGATG CTCTACGACGGTATCCCCTTGGTCTACCAGGGTCTGGAGCAGGCCATTGCCTATTCCAACCGAGCGGCCTTGTGG TTGACGGATTTCGACACCAATGCGACGCTATATAAACACATCAAGAAACTCAATGCCATCCGCAAACATGCCATT AACCTTGATTCCAGCTACATCAGTTCGAAAACATATCCCATCTATCAAGGAGGTAGCGAGTTGGCTTTCTGGAAG GGCAAAAATGGACGCCAAGTCATCATGGTCTTATCTACGGCGGGGTCTGGTGGTTCGGCTTATACTCTGACACTA CCTGTGAGCTATGGGGCAAGCGAGGTGGTCACGGAAGTGCTGAACTGCGTCAACTATACGGTCAACACTTACAGT CAATTGGTCGTGGACATGGATAAGGGCGAGCCTCGGGTCTTCTTTCCCGCTTCGATGATGCCGGGGAGCGGGCTG TGTGGCTACAATACTTCTAATGTGACGTATTCTGAGCTGAGACTTGCTGCTGTGGGCTCTTCGTCGTCTGCTGGT AGCCACTCTGTCATACCGTCTGCTTTTTCTTTGCTTTTCATGGCGATAGTTGCATTTTTGGCATTCCGGATATAA |