© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4560.t1 |
| Gene name | |
| Location | scaffold_023:222855..224591 |
| Strand | + |
| Gene length (bp) | 1736 |
| Transcript length (bp) | 1596 |
| Coding sequence length (bp) | 1596 |
| Protein length (aa) | 532 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 2.1E-54 | 63 | 505 |
| PF00324 | AA_permease | Amino acid permease | 4.1E-22 | 78 | 514 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
| 2 | 90 | 112 | 22 |
| 3 | 149 | 171 | 22 |
| 4 | 186 | 208 | 22 |
| 5 | 215 | 234 | 19 |
| 6 | 249 | 271 | 22 |
| 7 | 297 | 319 | 22 |
| 8 | 339 | 361 | 22 |
| 9 | 394 | 416 | 22 |
| 10 | 420 | 442 | 22 |
| 11 | 463 | 485 | 22 |
| 12 | 495 | 517 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4560.t1 MSPATGEAGSIQKGDRVVTTGCHPLEVEAGEGNGGETGTRYDHSDMNRMGKAQEFKRNLRPLAALSFASVLQATW EFILISNYEGLEDGGMAGLVWTYVWTFVGFGFIIVSLSEMASMAPTSGGQYHWVSEFASPRYQKFLSYITGWMSV LAWQAGAASGSFLTGTIIQGLISVRNPDYDPKRWQGTLFVFAMILIIYFFNVYAASWMPRIQNALLALHTICWVV VIVVLWAMAPRQSAKAVFTEFSLYGGWNNVGLALMIGQISAIYGSLSSDATAHMSEEVRDAGRYVPMAICGGYFS NGILALVLIITLMFAMPSVKDALDDPTGFPFIYVFKQAVSTAGVNGLTAIILIPVIFSNILFNASTARQTYAFAR DRGLPFSNWISKVNQHYKLPVNAIALSCIISGLLSLINIGSDTAFNAIISLNVAALMWTYAISISCVMYRKISCP DTLPPRRWSLGKHGIWINAVALVYVIFALFWSFWPTEIPVTLNNFNWSVVLFVGVFVISLAMYIVQGRRVYKGPV VDVKSS* |
| Coding | >Ani_SJS100_1|g4560.t1 ATGTCGCCCGCAACTGGGGAAGCGGGCAGCATCCAAAAGGGCGACCGGGTGGTGACGACGGGCTGTCATCCGTTG GAAGTCGAAGCCGGCGAGGGAAATGGCGGGGAAACCGGCACGCGATATGACCACAGCGACATGAACCGCATGGGC AAAGCGCAGGAGTTCAAGAGAAATCTCCGGCCTCTCGCTGCCTTAAGTTTCGCATCAGTCTTGCAGGCGACCTGG GAGTTCATTTTAATATCCAACTATGAAGGTCTTGAAGACGGTGGAATGGCTGGCCTGGTGTGGACATACGTGTGG ACCTTTGTCGGATTCGGCTTCATCATCGTCTCCTTATCGGAGATGGCATCCATGGCTCCAACATCAGGAGGACAG TACCACTGGGTGTCCGAATTCGCCTCTCCCCGATACCAAAAGTTTCTCAGCTACATTACCGGATGGATGTCCGTT CTCGCATGGCAAGCTGGCGCCGCATCAGGGTCCTTCCTGACCGGCACAATCATCCAAGGGCTCATCAGCGTGCGC AACCCCGATTACGACCCCAAGCGATGGCAAGGAACGCTCTTTGTTTTCGCCATGATCCTGATCATCTACTTCTTC AATGTCTACGCTGCCAGCTGGATGCCACGGATACAGAATGCCCTGCTAGCCCTGCACACCATCTGCTGGGTAGTC GTGATTGTCGTCCTCTGGGCCATGGCCCCACGCCAGTCCGCAAAGGCTGTATTCACCGAATTCAGCCTCTACGGC GGCTGGAACAACGTCGGGTTAGCATTAATGATCGGGCAAATATCCGCCATCTACGGATCCCTTAGCTCAGACGCC ACGGCACACATGTCAGAAGAGGTCCGCGACGCCGGCCGATACGTCCCCATGGCCATCTGCGGCGGCTACTTCAGC AACGGCATCCTAGCCCTCGTACTCATCATCACCCTCATGTTCGCCATGCCCTCCGTAAAAGATGCCTTAGATGAC CCAACCGGATTCCCCTTCATCTACGTCTTCAAACAAGCCGTCTCAACCGCCGGCGTCAACGGCCTCACCGCTATA ATCCTCATCCCAGTCATCTTCAGCAACATCCTCTTCAACGCCTCCACAGCCCGCCAGACCTACGCGTTTGCGCGC GACAGGGGCCTACCCTTCTCAAACTGGATCTCAAAAGTCAACCAGCATTACAAACTGCCCGTGAACGCCATCGCC CTATCATGCATCATCAGTGGCCTTCTCTCCCTTATTAACATTGGCTCCGACACCGCCTTCAACGCCATCATCTCC CTAAACGTAGCAGCGCTCATGTGGACCTACGCTATCTCCATCAGCTGCGTCATGTATCGCAAAATCTCCTGTCCG GACACATTACCCCCGCGACGGTGGAGTCTAGGGAAGCACGGGATCTGGATTAATGCGGTAGCGTTAGTCTATGTG ATCTTCGCGCTGTTTTGGTCTTTCTGGCCAACTGAGATACCCGTGACCCTGAACAATTTCAATTGGAGCGTGGTG CTCTTCGTGGGGGTGTTTGTTATTAGTTTGGCGATGTATATTGTTCAGGGGAGGAGGGTGTATAAGGGTCCTGTG GTGGATGTAAAAAGCAGTTGA |
| Transcript | >Ani_SJS100_1|g4560.t1 ATGTCGCCCGCAACTGGGGAAGCGGGCAGCATCCAAAAGGGCGACCGGGTGGTGACGACGGGCTGTCATCCGTTG GAAGTCGAAGCCGGCGAGGGAAATGGCGGGGAAACCGGCACGCGATATGACCACAGCGACATGAACCGCATGGGC AAAGCGCAGGAGTTCAAGAGAAATCTCCGGCCTCTCGCTGCCTTAAGTTTCGCATCAGTCTTGCAGGCGACCTGG GAGTTCATTTTAATATCCAACTATGAAGGTCTTGAAGACGGTGGAATGGCTGGCCTGGTGTGGACATACGTGTGG ACCTTTGTCGGATTCGGCTTCATCATCGTCTCCTTATCGGAGATGGCATCCATGGCTCCAACATCAGGAGGACAG TACCACTGGGTGTCCGAATTCGCCTCTCCCCGATACCAAAAGTTTCTCAGCTACATTACCGGATGGATGTCCGTT CTCGCATGGCAAGCTGGCGCCGCATCAGGGTCCTTCCTGACCGGCACAATCATCCAAGGGCTCATCAGCGTGCGC AACCCCGATTACGACCCCAAGCGATGGCAAGGAACGCTCTTTGTTTTCGCCATGATCCTGATCATCTACTTCTTC AATGTCTACGCTGCCAGCTGGATGCCACGGATACAGAATGCCCTGCTAGCCCTGCACACCATCTGCTGGGTAGTC GTGATTGTCGTCCTCTGGGCCATGGCCCCACGCCAGTCCGCAAAGGCTGTATTCACCGAATTCAGCCTCTACGGC GGCTGGAACAACGTCGGGTTAGCATTAATGATCGGGCAAATATCCGCCATCTACGGATCCCTTAGCTCAGACGCC ACGGCACACATGTCAGAAGAGGTCCGCGACGCCGGCCGATACGTCCCCATGGCCATCTGCGGCGGCTACTTCAGC AACGGCATCCTAGCCCTCGTACTCATCATCACCCTCATGTTCGCCATGCCCTCCGTAAAAGATGCCTTAGATGAC CCAACCGGATTCCCCTTCATCTACGTCTTCAAACAAGCCGTCTCAACCGCCGGCGTCAACGGCCTCACCGCTATA ATCCTCATCCCAGTCATCTTCAGCAACATCCTCTTCAACGCCTCCACAGCCCGCCAGACCTACGCGTTTGCGCGC GACAGGGGCCTACCCTTCTCAAACTGGATCTCAAAAGTCAACCAGCATTACAAACTGCCCGTGAACGCCATCGCC CTATCATGCATCATCAGTGGCCTTCTCTCCCTTATTAACATTGGCTCCGACACCGCCTTCAACGCCATCATCTCC CTAAACGTAGCAGCGCTCATGTGGACCTACGCTATCTCCATCAGCTGCGTCATGTATCGCAAAATCTCCTGTCCG GACACATTACCCCCGCGACGGTGGAGTCTAGGGAAGCACGGGATCTGGATTAATGCGGTAGCGTTAGTCTATGTG ATCTTCGCGCTGTTTTGGTCTTTCTGGCCAACTGAGATACCCGTGACCCTGAACAATTTCAATTGGAGCGTGGTG CTCTTCGTGGGGGTGTTTGTTATTAGTTTGGCGATGTATATTGTTCAGGGGAGGAGGGTGTATAAGGGTCCTGTG GTGGATGTAAAAAGCAGTTGA |
| Gene | >Ani_SJS100_1|g4560.t1 ATGTCGCCCGCAACTGGGGAAGCGGGCAGCATCCAAAAGGGCGACCGGGTGGTGACGACGGGCTGTCATCCGTTG GAAGTCGAAGCCGGCGAGGGAAATGGCGGGGAAACCGGCACGCGATATGACCACAGCGACATGAACCGCATGGGC AAAGCGCAGGAGTTCAAGGTACGATATCTACAATTCTTCCGCGACTAGCACAGTAAGAATGAGTAGCTGACCTCG TATTCAAATCTAGAGAAATCTCCGGCCTCTCGCTGCCTTAAGTTTCGCATCAGTCTTGCAGGCGACCTGGGAGTT CATTTTAATGTACGGCATCATCTTCCTATCATCTCATACCACGCACATTCTTCCAGCACTAACGCATTCGAGTGA CCAGATCCAACTATGAAGGTCTTGAAGACGGTGGAATGGCTGGCCTGGTGTGGACATACGTGTGGACCTTTGTCG GATTCGGCTTCATCATCGTCTCCTTATCGGAGATGGCATCCATGGCTCCAACATCAGGAGGACAGTACCACTGGG TGTCCGAATTCGCCTCTCCCCGATACCAAAAGTTTCTCAGCTACATTACCGGATGGATGTCCGTTCTCGCATGGC AAGCTGGCGCCGCATCAGGGTCCTTCCTGACCGGCACAATCATCCAAGGGCTCATCAGCGTGCGCAACCCCGATT ACGACCCCAAGCGATGGCAAGGAACGCTCTTTGTTTTCGCCATGATCCTGATCATCTACTTCTTCAATGTCTACG CTGCCAGCTGGATGCCACGGATACAGAATGCCCTGCTAGCCCTGCACACCATCTGCTGGGTAGTCGTGATTGTCG TCCTCTGGGCCATGGCCCCACGCCAGTCCGCAAAGGCTGTATTCACCGAATTCAGCCTCTACGGCGGCTGGAACA ACGTCGGGTTAGCATTAATGATCGGGCAAATATCCGCCATCTACGGATCCCTTAGCTCAGACGCCACGGCACACA TGTCAGAAGAGGTCCGCGACGCCGGCCGATACGTCCCCATGGCCATCTGCGGCGGCTACTTCAGCAACGGCATCC TAGCCCTCGTACTCATCATCACCCTCATGTTCGCCATGCCCTCCGTAAAAGATGCCTTAGATGACCCAACCGGAT TCCCCTTCATCTACGTCTTCAAACAAGCCGTCTCAACCGCCGGCGTCAACGGCCTCACCGCTATAATCCTCATCC CAGTCATCTTCAGCAACATCCTCTTCAACGCCTCCACAGCCCGCCAGACCTACGCGTTTGCGCGCGACAGGGGCC TACCCTTCTCAAACTGGATCTCAAAAGTCAACCAGCATTACAAACTGCCCGTGAACGCCATCGCCCTATCATGCA TCATCAGTGGCCTTCTCTCCCTTATTAACATTGGCTCCGACACCGCCTTCAACGCCATCATCTCCCTAAACGTAG CAGCGCTCATGTGGACCTACGCTATCTCCATCAGCTGCGTCATGTATCGCAAAATCTCCTGTCCGGACACATTAC CCCCGCGACGGTGGAGTCTAGGGAAGCACGGGATCTGGATTAATGCGGTAGCGTTAGTCTATGTGATCTTCGCGC TGTTTTGGTCTTTCTGGCCAACTGAGATACCCGTGACCCTGAACAATTTCAATTGGAGCGTGGTGCTCTTCGTGG GGGTGTTTGTTATTAGTTTGGCGATGTATATTGTTCAGGGGAGGAGGGTGTATAAGGGTCCTGTGGTGGATGTAA AAAGCAGTTGA |