© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4549.t1 |
| Gene name | |
| Location | scaffold_023:185257..186263 |
| Strand | - |
| Gene length (bp) | 1006 |
| Transcript length (bp) | 867 |
| Coding sequence length (bp) | 867 |
| Protein length (aa) | 289 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 5.8E-85 | 52 | 270 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 54 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 75 | 97 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 131 | 153 | 22 |
| 4 | 168 | 190 | 22 |
| 5 | 197 | 219 | 22 |
| 6 | 234 | 253 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4549.t1 MSSTPSSQEKPPTAEPTLVRTNTSTATPNDSYHFDFGPLAHVNTAGTIYPAFAGELQPGLWKPQKRRKIANPAPL GLCGFALTTFLLGCINMQTLGIATPNMIVGPALAYGGLVQLLAGMWEMAAGNTFGATALSSYGGFWISLSIVFTP GGFDIQGAYKAADNGSMGMFYDAFGLYLMGWFIFTFLLWLCTLKSTYVFCALFAAVDIALLLLAVGYIHRTAPEV PNAKIIKAGGLFALLGAFMAWYVALAGIADDSNSFFLVPVFHFPWSEKGRESRRKDGESGETV* |
| Coding | >Ani_SJS100_1|g4549.t1 ATGTCTTCCACCCCCAGCTCCCAGGAGAAACCCCCAACCGCTGAACCAACCCTCGTGAGAACAAACACTTCCACA GCAACTCCCAATGACTCCTACCACTTCGACTTCGGGCCCCTCGCCCACGTCAACACAGCAGGAACCATCTATCCC GCCTTCGCCGGCGAACTCCAACCCGGTCTCTGGAAGCCCCAGAAGCGTCGCAAGATCGCCAATCCCGCACCGTTA GGACTATGCGGGTTCGCGCTCACTACATTCCTCCTGGGCTGCATCAACATGCAAACTCTGGGAATCGCCACACCG AACATGATCGTCGGCCCTGCTCTCGCATACGGGGGTCTTGTCCAGCTTCTCGCGGGCATGTGGGAAATGGCCGCC GGGAACACCTTCGGCGCAACCGCACTCTCCTCCTACGGCGGCTTCTGGATCTCCCTATCCATAGTCTTCACTCCA GGCGGATTCGACATCCAGGGCGCCTACAAAGCAGCCGATAATGGCAGCATGGGGATGTTCTACGACGCATTCGGA TTATACCTAATGGGCTGGTTCATCTTCACCTTCCTCCTCTGGCTCTGCACGCTCAAATCGACCTACGTCTTCTGC GCCCTCTTCGCGGCCGTCGATATCGCCCTCCTCCTCCTAGCAGTCGGGTATATCCACCGCACTGCGCCAGAGGTT CCCAACGCAAAGATCATTAAAGCCGGTGGGTTGTTTGCGCTGCTGGGCGCCTTCATGGCTTGGTATGTTGCGTTG GCGGGTATCGCGGACGATAGTAATAGTTTCTTTCTTGTTCCTGTGTTTCATTTCCCGTGGTCGGAGAAGGGGAGG GAGTCGAGACGGAAGGACGGGGAGAGTGGGGAGACTGTTTGA |
| Transcript | >Ani_SJS100_1|g4549.t1 ATGTCTTCCACCCCCAGCTCCCAGGAGAAACCCCCAACCGCTGAACCAACCCTCGTGAGAACAAACACTTCCACA GCAACTCCCAATGACTCCTACCACTTCGACTTCGGGCCCCTCGCCCACGTCAACACAGCAGGAACCATCTATCCC GCCTTCGCCGGCGAACTCCAACCCGGTCTCTGGAAGCCCCAGAAGCGTCGCAAGATCGCCAATCCCGCACCGTTA GGACTATGCGGGTTCGCGCTCACTACATTCCTCCTGGGCTGCATCAACATGCAAACTCTGGGAATCGCCACACCG AACATGATCGTCGGCCCTGCTCTCGCATACGGGGGTCTTGTCCAGCTTCTCGCGGGCATGTGGGAAATGGCCGCC GGGAACACCTTCGGCGCAACCGCACTCTCCTCCTACGGCGGCTTCTGGATCTCCCTATCCATAGTCTTCACTCCA GGCGGATTCGACATCCAGGGCGCCTACAAAGCAGCCGATAATGGCAGCATGGGGATGTTCTACGACGCATTCGGA TTATACCTAATGGGCTGGTTCATCTTCACCTTCCTCCTCTGGCTCTGCACGCTCAAATCGACCTACGTCTTCTGC GCCCTCTTCGCGGCCGTCGATATCGCCCTCCTCCTCCTAGCAGTCGGGTATATCCACCGCACTGCGCCAGAGGTT CCCAACGCAAAGATCATTAAAGCCGGTGGGTTGTTTGCGCTGCTGGGCGCCTTCATGGCTTGGTATGTTGCGTTG GCGGGTATCGCGGACGATAGTAATAGTTTCTTTCTTGTTCCTGTGTTTCATTTCCCGTGGTCGGAGAAGGGGAGG GAGTCGAGACGGAAGGACGGGGAGAGTGGGGAGACTGTTTGA |
| Gene | >Ani_SJS100_1|g4549.t1 ATGTCTTCCACCCCCAGCTCCCAGGAGAAACCCCCAACCGCTGAACCAACCCTCGTGAGAACAAACACTTCCACA GCAACTCCCAATGACTCCTACCACTTCGACTTCGGGCCCCTCGCCCACGTCAACACAGCAGGAACCATCTATCCC GCCTTCGCCGGCGAACTCCAACCCGGTCTCTGGAAGCCCCAGAAGCGTCGCAAGATCGCCAATCCCGCACCGTTA GGACTATGCGGGTTCGCGCTCACTACATTCCTCCTGGGCTGCATCAACATGCAAACTCTGGGAATCGCCACACCG AACATGATCGTCGGCCCTGCTCTCGCATACGGGGGTCTTGTCCAGCTTCTCGCGGGCATGTGGTACGTACATACC TCCCCCCCAACGGCAATCCAACCTAGCAACTCAAGTCCCCCATCAATGTCCATGTCCACTAACCAATCAAACCAG GGAAATGGCCGCCGGGAACACCTTCGGCGCAACCGCACTCTCCTCCTACGGCGGCTTCTGGATCTCCCTATCCAT AGTCTTCACTCCAGGCGGATTCGACATCCAGGGCGCCTACAAAGCAGCCGATAATGGCAGCATGGGGATGTTCTA CGACGCATTCGGATTATACCTAATGGTATTTCACTCTCCACCCAATCATTACCACGAAGTACTAATAATAATCCA GGGCTGGTTCATCTTCACCTTCCTCCTCTGGCTCTGCACGCTCAAATCGACCTACGTCTTCTGCGCCCTCTTCGC GGCCGTCGATATCGCCCTCCTCCTCCTAGCAGTCGGGTATATCCACCGCACTGCGCCAGAGGTTCCCAACGCAAA GATCATTAAAGCCGGTGGGTTGTTTGCGCTGCTGGGCGCCTTCATGGCTTGGTATGTTGCGTTGGCGGGTATCGC GGACGATAGTAATAGTTTCTTTCTTGTTCCTGTGTTTCATTTCCCGTGGTCGGAGAAGGGGAGGGAGTCGAGACG GAAGGACGGGGAGAGTGGGGAGACTGTTTGA |