© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4543.t1 |
| Gene name | |
| Location | scaffold_023:167389..168614 |
| Strand | - |
| Gene length (bp) | 1225 |
| Transcript length (bp) | 906 |
| Coding sequence length (bp) | 906 |
| Protein length (aa) | 302 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.5E-19 | 61 | 290 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 122 | 140 | 18 |
| 4 | 150 | 172 | 22 |
| 5 | 184 | 203 | 19 |
| 6 | 213 | 235 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4543.t1 MGETNTAVEMSTLPLGKMEIEKEVDGAASYLAHSTSYPPMTLEVERKLLRKIDCILVPMLLLTATLGAVDKVALS TAAIYGLEKDLHLVGQQYSWAGSILSIGAIIGMCPSSFLVQRLPSAKYLSSCSLGWSCLALLIPASKNWNGLMAL RFFMGYLEAIIVPTISLIVAGFYKKAEQPPRNAIVFAAFSSVINGFLSWAVGHIPDSAPLAIWQYLYLIVGSLSA VWSITAFVLLPESPMNAFFFTDQESFYATQRLAENQTGIINKEWKREQALEAVLDAKTWILFSFNIAINIPNGVA S* |
| Coding | >Ani_SJS100_1|g4543.t1 ATGGGAGAGACGAACACAGCAGTAGAGATGTCAACATTACCACTAGGAAAGATGGAGATCGAAAAGGAAGTTGAT GGAGCTGCTTCGTACCTTGCTCACAGCACAAGTTATCCTCCCATGACATTGGAAGTGGAAAGAAAATTGTTGCGC AAGATCGACTGCATTCTAGTTCCCATGCTTCTGCTCACCGCCACTCTCGGGGCAGTGGACAAGGTTGCTCTCAGT ACTGCGGCAATCTATGGACTGGAGAAAGATCTTCATCTCGTTGGTCAACAGTACTCCTGGGCGGGATCAATTTTA TCTATCGGTGCGATCATTGGGATGTGCCCTTCTTCCTTCCTCGTACAGCGACTCCCATCCGCAAAATATCTTTCT TCGTGCTCCCTCGGCTGGTCCTGCTTAGCTCTGCTGATACCCGCATCGAAAAACTGGAACGGGCTGATGGCGCTG AGGTTTTTTATGGGCTACCTTGAAGCAATCATCGTCCCAACGATTAGTCTCATCGTCGCCGGCTTCTATAAAAAG GCGGAACAACCTCCACGAAATGCAATTGTGTTCGCTGCTTTCAGCTCCGTGATCAATGGGTTCCTGTCTTGGGCA GTCGGGCATATCCCCGACTCTGCACCTCTGGCTATCTGGCAATATCTTTACCTGATTGTCGGCTCTCTTTCCGCA GTGTGGTCCATAACAGCGTTCGTGCTTCTACCAGAATCGCCGATGAACGCCTTCTTTTTCACCGACCAGGAAAGT TTCTATGCAACCCAACGTCTGGCGGAAAACCAAACCGGCATCATAAACAAAGAATGGAAACGGGAACAGGCTCTT GAAGCTGTGTTGGATGCCAAAACTTGGATTCTGTTTTCCTTCAACATAGCTATCAACATTCCTAATGGAGTGGCA TCCTGA |
| Transcript | >Ani_SJS100_1|g4543.t1 ATGGGAGAGACGAACACAGCAGTAGAGATGTCAACATTACCACTAGGAAAGATGGAGATCGAAAAGGAAGTTGAT GGAGCTGCTTCGTACCTTGCTCACAGCACAAGTTATCCTCCCATGACATTGGAAGTGGAAAGAAAATTGTTGCGC AAGATCGACTGCATTCTAGTTCCCATGCTTCTGCTCACCGCCACTCTCGGGGCAGTGGACAAGGTTGCTCTCAGT ACTGCGGCAATCTATGGACTGGAGAAAGATCTTCATCTCGTTGGTCAACAGTACTCCTGGGCGGGATCAATTTTA TCTATCGGTGCGATCATTGGGATGTGCCCTTCTTCCTTCCTCGTACAGCGACTCCCATCCGCAAAATATCTTTCT TCGTGCTCCCTCGGCTGGTCCTGCTTAGCTCTGCTGATACCCGCATCGAAAAACTGGAACGGGCTGATGGCGCTG AGGTTTTTTATGGGCTACCTTGAAGCAATCATCGTCCCAACGATTAGTCTCATCGTCGCCGGCTTCTATAAAAAG GCGGAACAACCTCCACGAAATGCAATTGTGTTCGCTGCTTTCAGCTCCGTGATCAATGGGTTCCTGTCTTGGGCA GTCGGGCATATCCCCGACTCTGCACCTCTGGCTATCTGGCAATATCTTTACCTGATTGTCGGCTCTCTTTCCGCA GTGTGGTCCATAACAGCGTTCGTGCTTCTACCAGAATCGCCGATGAACGCCTTCTTTTTCACCGACCAGGAAAGT TTCTATGCAACCCAACGTCTGGCGGAAAACCAAACCGGCATCATAAACAAAGAATGGAAACGGGAACAGGCTCTT GAAGCTGTGTTGGATGCCAAAACTTGGATTCTGTTTTCCTTCAACATAGCTATCAACATTCCTAATGGAGTGGCA TCCTGA |
| Gene | >Ani_SJS100_1|g4543.t1 ATGGGAGAGACGAACACAGCAGTAGAGATGTCAACATTACCACTAGGAAAGATGGAGATCGAAAAGGAAGTTGAT GGAGCTGCTTCGTACCTTGCTCACAGCACAAGTTATCCTCCCATGACATTGGAAGTGGAAAGAAAATTGTTGCGC AAGATCGACTGCATTCTAGTTCCCATGGTAAGCTTCTTACCAGACCATAAGCATTACGTCTACTGATCAAGGCCA GCTTCTGCTCACCGCCACTCTCGGGGCAGTGGACAAGGTTGCTCTCAGTACTGCGGCAATCTATGGACTGGAGAA AGGTATCGATGGCCATCGCTATCGCATATTGCCCTAACAAGTATCTAGATCTTCATCTCGTTGGTCAACAGTACT CCTGGGCGGGATCAATTTTATCTATCGGTGTACGTGTTTCTTACTGTTGTCCATTACCCAAAATCTGACACTGAG GAAGGCGATCATTGGGATGTGCCCTTCTTCCTTCCTCGTACAGCGACTCCCATCCGCAAAATATCTTTCTTCGTG CTCCCTCGGCTGGTCCTGCTTAGCTCTGCTGATACCCGCATCGAAAAACTGGAACGGGCTGATGGCGCTGAGGTT TTTTATGGGTATGTTCTCAAGGTACACTCAACAACACTGATAAGGACGCCATGATAGTGATATCCCTAATCTAGG CTACCTTGAAGCAATCATCGTCCCAACGATTAGTCTCATCGTCGCCGGCTTCTATAAAAAGGCGGAACAACCTCC ACGAAATGCAATTGTGTTCGCTGCTTTCAGCTCCGTGATCAATGGGTTCCTGTCTTGGGCAGTCGGGCATATCCC CGACTCTGCACCTCTGGCTATCTGGCAATATCTTTACCTGATTGTCGGTAAGTGAAACACCTATCATAGTACTGC GATCTGCTAAGTACTTAGGCTCTCTTTCCGCAGTGTGGTCCATAACAGCGTTCGTGCTTCTACCAGAATCGCCGA TGAACGCCTTCTTTTTCACCGACCAGGAAAGTTTCTATGCAACCCAACGTCTGGCGGAAAACCAAACCGGCATCA TAAACAAAGAATGGAAACGGGAACAGGCTCTTGAAGCTGTGTTGGATGCCAAAACTTGGATTCTGTTTTCCTTCA ACATAGCTATCAACATTCCTAATGGAGGTAAACTGCCTTCTCGCGTGTAGCTCTACTATCGCTTACGATATAGGT CTGACTACGTTTAGTGGCATCCTGA |