© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4524.t1 |
| Gene name | |
| Location | scaffold_023:116178..117872 |
| Strand | - |
| Gene length (bp) | 1694 |
| Transcript length (bp) | 1533 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00230 | MIP | Major intrinsic protein | 2.4E-44 | 211 | 457 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015267 | channel activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 221 | 243 | 22 |
| 2 | 258 | 277 | 19 |
| 3 | 297 | 319 | 22 |
| 4 | 352 | 374 | 22 |
| 5 | 387 | 409 | 22 |
| 6 | 439 | 461 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4524.t1 MVHPVRSLNKELDQVDTESRGYRSSDTTEGGSSKVEDGDEPIEETSRRGVSRNKSHGTQRTNFSRNKSHASHRTG VSQNQSYRSQPPATLRNQSYGSQAQFSLAGPNAYYGPLPQQGAYMHPEYQSFNPQYGNMQGDKPVWSLAQPLPHV VRDGMRYGALPEDRKEERDEDGRERPPPASEEPPTDIPKTDEARENGEEPQNEMGFFNKWSKIRYYLREPLGEWL GTTIAITLGLCGGLSTYTSDGQAGSWMTQSACWGFSFMIGIYIVGGISGGHLNPAITISMSLWRGFPARRCVIYI LAQLIGAITAGGFAYAIYHDAIVNLSVETNLPQSETTASQAFLTLPKQFVSPATAFFNEFLGTAILVGTIMALGD DTNAPPGAGMQAFIIGILITVLVLALGYNTGGAFNGPRDFGPRLVAVMAGWGGYLFKEYHAWWIWGPWVADIFGG LFGAFIYDLVVFTGGESPINYPPRRRKRALLIKEKNLRSKLRFGRRKIGDIERAVEENQD* |
| Coding | >Ani_SJS100_1|g4524.t1 ATGGTGCACCCGGTTAGGTCTCTCAACAAAGAGCTCGATCAGGTCGACACCGAATCGAGAGGTTATCGATCGTCT GACACAACGGAGGGCGGATCTTCCAAGGTCGAAGACGGTGATGAGCCTATCGAAGAGACCTCCAGGAGGGGCGTC TCTCGCAACAAAAGTCATGGAACTCAACGCACAAATTTCTCGCGAAACAAAAGCCATGCCAGTCACCGCACTGGC GTATCTCAAAATCAGAGTTATCGAAGCCAGCCTCCCGCTACCCTGAGGAACCAAAGCTATGGGAGTCAAGCACAG TTCTCCCTGGCAGGTCCGAATGCGTATTATGGACCACTACCTCAACAGGGCGCCTACATGCATCCGGAGTATCAG TCATTTAATCCTCAATACGGAAACATGCAAGGGGACAAGCCTGTCTGGAGTCTAGCGCAGCCGCTGCCCCATGTT GTCCGAGACGGAATGCGGTATGGAGCCTTGCCGGAGGATCGAAAGGAAGAAAGAGACGAGGATGGACGAGAACGC CCGCCTCCAGCGTCAGAAGAGCCGCCCACGGATATTCCGAAGACGGATGAAGCTAGAGAGAATGGCGAAGAGCCC CAGAATGAGATGGGATTTTTCAATAAGTGGTCCAAGATTCGATATTATCTGAGGGAGCCATTGGGCGAGTGGTTG GGGACAACCATCGCCATCACTCTCGGTCTCTGCGGCGGGTTGTCAACCTACACATCGGACGGCCAAGCCGGCTCA TGGATGACCCAGAGTGCCTGTTGGGGCTTCAGCTTCATGATCGGCATCTACATTGTTGGTGGCATCTCCGGTGGC CACCTCAATCCCGCCATCACAATCTCCATGTCCCTCTGGCGAGGATTTCCCGCCCGCCGATGTGTTATTTACATC CTCGCTCAGCTGATCGGCGCCATCACCGCCGGCGGATTCGCCTACGCCATTTACCACGACGCCATCGTCAACCTC TCCGTCGAGACCAACCTCCCACAAAGCGAAACAACAGCTAGCCAAGCATTTCTAACTCTACCAAAACAATTCGTC AGTCCAGCTACTGCATTCTTCAATGAGTTCCTAGGCACCGCTATTCTCGTCGGAACCATCATGGCCTTGGGTGAC GACACCAACGCCCCCCCAGGAGCAGGAATGCAAGCATTCATCATCGGCATACTGATCACCGTATTAGTCCTTGCC CTAGGATATAACACAGGCGGAGCATTCAACGGCCCCCGCGACTTCGGCCCCCGGCTCGTCGCCGTAATGGCCGGG TGGGGCGGATACCTCTTCAAAGAGTACCATGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGACATCTTCGGAGGA TTGTTCGGGGCGTTCATCTACGATTTAGTGGTGTTCACTGGTGGCGAAAGCCCGATCAATTACCCGCCGAGGAGA CGCAAGCGCGCACTGCTGATCAAGGAGAAGAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAGGAAGATCGGGGAT ATTGAGAGGGCAGTTGAGGAGAACCAGGATTGA |
| Transcript | >Ani_SJS100_1|g4524.t1 ATGGTGCACCCGGTTAGGTCTCTCAACAAAGAGCTCGATCAGGTCGACACCGAATCGAGAGGTTATCGATCGTCT GACACAACGGAGGGCGGATCTTCCAAGGTCGAAGACGGTGATGAGCCTATCGAAGAGACCTCCAGGAGGGGCGTC TCTCGCAACAAAAGTCATGGAACTCAACGCACAAATTTCTCGCGAAACAAAAGCCATGCCAGTCACCGCACTGGC GTATCTCAAAATCAGAGTTATCGAAGCCAGCCTCCCGCTACCCTGAGGAACCAAAGCTATGGGAGTCAAGCACAG TTCTCCCTGGCAGGTCCGAATGCGTATTATGGACCACTACCTCAACAGGGCGCCTACATGCATCCGGAGTATCAG TCATTTAATCCTCAATACGGAAACATGCAAGGGGACAAGCCTGTCTGGAGTCTAGCGCAGCCGCTGCCCCATGTT GTCCGAGACGGAATGCGGTATGGAGCCTTGCCGGAGGATCGAAAGGAAGAAAGAGACGAGGATGGACGAGAACGC CCGCCTCCAGCGTCAGAAGAGCCGCCCACGGATATTCCGAAGACGGATGAAGCTAGAGAGAATGGCGAAGAGCCC CAGAATGAGATGGGATTTTTCAATAAGTGGTCCAAGATTCGATATTATCTGAGGGAGCCATTGGGCGAGTGGTTG GGGACAACCATCGCCATCACTCTCGGTCTCTGCGGCGGGTTGTCAACCTACACATCGGACGGCCAAGCCGGCTCA TGGATGACCCAGAGTGCCTGTTGGGGCTTCAGCTTCATGATCGGCATCTACATTGTTGGTGGCATCTCCGGTGGC CACCTCAATCCCGCCATCACAATCTCCATGTCCCTCTGGCGAGGATTTCCCGCCCGCCGATGTGTTATTTACATC CTCGCTCAGCTGATCGGCGCCATCACCGCCGGCGGATTCGCCTACGCCATTTACCACGACGCCATCGTCAACCTC TCCGTCGAGACCAACCTCCCACAAAGCGAAACAACAGCTAGCCAAGCATTTCTAACTCTACCAAAACAATTCGTC AGTCCAGCTACTGCATTCTTCAATGAGTTCCTAGGCACCGCTATTCTCGTCGGAACCATCATGGCCTTGGGTGAC GACACCAACGCCCCCCCAGGAGCAGGAATGCAAGCATTCATCATCGGCATACTGATCACCGTATTAGTCCTTGCC CTAGGATATAACACAGGCGGAGCATTCAACGGCCCCCGCGACTTCGGCCCCCGGCTCGTCGCCGTAATGGCCGGG TGGGGCGGATACCTCTTCAAAGAGTACCATGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGACATCTTCGGAGGA TTGTTCGGGGCGTTCATCTACGATTTAGTGGTGTTCACTGGTGGCGAAAGCCCGATCAATTACCCGCCGAGGAGA CGCAAGCGCGCACTGCTGATCAAGGAGAAGAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAGGAAGATCGGGGAT ATTGAGAGGGCAGTTGAGGAGAACCAGGATTGA |
| Gene | >Ani_SJS100_1|g4524.t1 ATGGTGCACCCGGTTAGGTCTCTCAACAAAGAGCTCGATCGTAAGTGTAAATGGAATAAGTAATGTTTCCCGCTA ACAGCTCGTAGAGGTCGACACCGAATCGAGAGGTTATCGATCGTCTGACACAACGGAGGGCGGATCTTCCAAGGT CGAAGACGGTGATGAGCCTATCGAAGAGACCTCCAGGAGGGGCGTCTCTCGCAACAAAAGTCATGGAACTCAACG CACAAATTTCTCGCGAAACAAAAGCCATGCCAGTCACCGCACTGGCGTATCTCAAAATCAGAGTTATCGAAGCCA GCCTCCCGCTACCCTGAGGAACCAAAGCTATGGGAGTCAAGCACAGTTCTCCCTGGCAGGTCCGAATGCGTATTA TGGACCACTACCTCAACAGGGCGCCTACATGCATCCGGAGTATCAGTCATTTAATCCTCAATACGGAAACATGCA AGGGGACAAGCCTGTCTGGAGTCTAGCGCAGCCGCTGCCCCATGTTGTCCGAGACGGAATGCGGTATGGAGCCTT GCCGGAGGATCGAAAGGAAGAAAGAGACGAGGATGGACGAGAACGCCCGCCTCCAGCGTCAGAAGAGCCGCCCAC GGATATTCCGAAGACGGATGAAGCTAGAGAGAATGGCGAAGAGCCCCAGAATGAGATGGGATTTTTCAATAAGTG GTCCAAGATTCGATATTATCTGAGGGAGCCATTGGGCGAGTGGTTGGGGGTGAGTATTCACTTGGACTATCTATT CTAATACAGCCCAAACTAACACACAATCACCAGACAACCATCGCCATCACTCTCGGTCTCTGCGGCGGGTTGTCA ACCTACACATCGGACGGCCAAGCCGGCTCATGGATGACCCAGAGTGCCTGTTGGGGCTTCAGCTTCATGATCGGC ATCTACATTGTTGGTGGCATCTCCGGTGGCCACCTCAATCCCGCCATCACAATCTCCATGTCCCTCTGGCGAGGA TTTCCCGCCCGCCGATGTGTTATTTACATCCTCGCTCAGCTGATCGGCGCCATCACCGCCGGCGGATTCGCCTAC GCCATTTACCACGACGCCATCGTCAACCTCTCCGTCGAGACCAACCTCCCACAAAGCGAAACAACAGCTAGCCAA GCATTTCTAACTCTACCAAAACAATTCGTCAGTCCAGCTACTGCATTCTTCAATGAGTTCCTAGGCACCGCTATT CTCGTCGGAACCATCATGGCCTTGGGTGACGACACCAACGCCCCCCCAGGAGCAGGAATGCAAGCATTCATCATC GGCATACTGATCACCGTATTAGTCCTTGCCCTAGGATATAACACAGGCGGGTACGTACCCCCTCTCTCCCCCACC CCAGAAGCCCCGACGACTAATAATTACCAAGAGCATTCAACGGCCCCCGCGACTTCGGCCCCCGGCTCGTCGCCG TAATGGCCGGGTGGGGCGGATACCTCTTCAAAGAGTACCATGCCTGGTGGATCTGGGGCCCTTGGGTCGCCGACA TCTTCGGAGGATTGTTCGGGGCGTTCATCTACGATTTAGTGGTGTTCACTGGTGGCGAAAGCCCGATCAATTACC CGCCGAGGAGACGCAAGCGCGCACTGCTGATCAAGGAGAAGAATCTGAGAAGCAAGTTGCGTTTTGGGAGGAGGA AGATCGGGGATATTGAGAGGGCAGTTGAGGAGAACCAGGATTGA |