© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4478.t1 |
| Gene name | |
| Location | scaffold_022:384934..386182 |
| Strand | - |
| Gene length (bp) | 1248 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00635 | Motile_Sperm | MSP (Major sperm protein) domain | 1.9E-23 | 4 | 95 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 266 | 285 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4478.t1 MSIILEPPELGFKRPFDREVCQILHLKNDNAEPVVFKVKTTAPKHYCVRPNSGRIDPGKNVDVQVLLQAMKEEPA DDAKCKDKFLVQTVAVTRDMEFANVTSIFEKSSKASLQERKIRVNWLPADDSSAAEQVTETNGTMPEEEPPAYTS PPNANFQTPAAAVAKSANDTSPIPPPDFSDKPKREVSTPQAIAESPATSTKSAMMGGAASSSDDLKAQLSEANAQ ILALKEKLADQGLRQRKIGGETEKAPAPLVQQQPQSAEAGVPVQMVAGLCLLSFLIAYFFF* |
| Coding | >Ani_SJS100_1|g4478.t1 ATGTCTATTATTCTCGAGCCTCCGGAGTTGGGATTCAAGCGCCCCTTCGATCGTGAGGTGTGCCAGATCTTGCAT TTGAAGAATGACAACGCTGAGCCGGTGGTCTTCAAGGTTAAAACGACTGCCCCTAAACATTACTGTGTTCGCCCG AACTCGGGCCGGATAGATCCTGGAAAGAATGTCGACGTTCAAGTTCTGCTCCAGGCCATGAAGGAAGAACCTGCA GATGATGCCAAGTGCAAGGACAAGTTTCTAGTCCAGACTGTTGCCGTCACTCGCGATATGGAGTTCGCCAATGTT ACTTCGATTTTCGAGAAATCTTCCAAGGCTTCGCTTCAAGAACGCAAGATCCGTGTGAACTGGTTGCCTGCAGAT GATTCCTCAGCTGCCGAACAAGTCACCGAAACGAATGGCACTATGCCGGAAGAAGAACCCCCAGCCTACACCTCT CCTCCTAATGCGAACTTCCAGACACCTGCTGCAGCAGTTGCTAAAAGCGCTAACGACACGTCACCGATCCCACCG CCAGATTTCAGCGATAAGCCCAAGCGGGAAGTGTCGACCCCACAAGCGATTGCTGAGAGCCCAGCCACGTCTACA AAGTCGGCCATGATGGGCGGGGCAGCAAGTTCAAGCGATGATCTGAAAGCCCAATTGTCCGAGGCTAACGCGCAG ATTTTGGCGCTGAAGGAGAAGCTCGCAGATCAGGGCCTGAGGCAGCGGAAGATCGGAGGTGAAACCGAAAAGGCG CCGGCGCCATTGGTGCAGCAGCAGCCGCAATCTGCCGAGGCAGGCGTGCCAGTGCAGATGGTCGCTGGCTTGTGC CTCCTCAGTTTCCTGATCGCATACTTCTTCTTCTAA |
| Transcript | >Ani_SJS100_1|g4478.t1 ATGTCTATTATTCTCGAGCCTCCGGAGTTGGGATTCAAGCGCCCCTTCGATCGTGAGGTGTGCCAGATCTTGCAT TTGAAGAATGACAACGCTGAGCCGGTGGTCTTCAAGGTTAAAACGACTGCCCCTAAACATTACTGTGTTCGCCCG AACTCGGGCCGGATAGATCCTGGAAAGAATGTCGACGTTCAAGTTCTGCTCCAGGCCATGAAGGAAGAACCTGCA GATGATGCCAAGTGCAAGGACAAGTTTCTAGTCCAGACTGTTGCCGTCACTCGCGATATGGAGTTCGCCAATGTT ACTTCGATTTTCGAGAAATCTTCCAAGGCTTCGCTTCAAGAACGCAAGATCCGTGTGAACTGGTTGCCTGCAGAT GATTCCTCAGCTGCCGAACAAGTCACCGAAACGAATGGCACTATGCCGGAAGAAGAACCCCCAGCCTACACCTCT CCTCCTAATGCGAACTTCCAGACACCTGCTGCAGCAGTTGCTAAAAGCGCTAACGACACGTCACCGATCCCACCG CCAGATTTCAGCGATAAGCCCAAGCGGGAAGTGTCGACCCCACAAGCGATTGCTGAGAGCCCAGCCACGTCTACA AAGTCGGCCATGATGGGCGGGGCAGCAAGTTCAAGCGATGATCTGAAAGCCCAATTGTCCGAGGCTAACGCGCAG ATTTTGGCGCTGAAGGAGAAGCTCGCAGATCAGGGCCTGAGGCAGCGGAAGATCGGAGGTGAAACCGAAAAGGCG CCGGCGCCATTGGTGCAGCAGCAGCCGCAATCTGCCGAGGCAGGCGTGCCAGTGCAGATGGTCGCTGGCTTGTGC CTCCTCAGTTTCCTGATCGCATACTTCTTCTTCTAA |
| Gene | >Ani_SJS100_1|g4478.t1 ATGTCTATTATTCTCGAGCCTCCGGAGTTGGGATTCAAGCGTACGTGGTGTCCTGAATCGATCTATATACCCCCC TCCTGGAAGTATCCGAGAGCTGACTAAATCCCCAGGCCCCTTCGATCGTGAGGTGTGCCAGATCTTGCATTTGAA GAATGACAACGCTGAGCCGGTGGTCTTCAAGGTTGGTTATATCGACTTCCCTGAACGTCTTTGGATTGTCTTATG CTAACAACGAATCTCCCTCCAGGTTAAAACGACTGCCCCTAAACAGTACGTGGCCACACCCCTTCGTCATTAGCC ATACTAGTATCGTTGCAACAAGGGTTTAACATGAAATAGTTACTGTGTTCGCCCGAACTCGGGCCGGATAGATCC TGGAAAGAATGTCGACGTTCAAGGTTGGTTTCTCAGTGCCTCGTTGGATTGTTGCCGTTGCGCAATGGCTGACGA TCTCGATAGTTCTGCTCCAGGCCATGAAGGAAGAACCTGCAGATGATGCCAAGTGCAAGGACAAGTTTCTAGTCC AGACTGTTGCCGTCACTCGCGATATGGAGTTCGCCAATGTTACTTCGATTGTATGTCTGTTTTCATGGTGATCCC CACCGGCAGCAATCTAACATAATCCCATAGTTCGAGAAATCTTCCAAGGCTTCGCTTCAAGAACGCAAGATCCGT GTGAACTGGTTGCCTGCAGATGATTCCTCAGCTGCCGAACAAGTCACCGAAACGAATGGCGTAACTAACCCCTCA CCGACCCCTTTTCGGATCTCCAGCCATCGGATAACTAATTGTTCTATTTAGACTATGCCGGAAGAAGAACCCCCA GCCTACACCTCTCCTCCTAATGCGAACTTCCAGACACCTGCTGCAGCAGTTGCTAAAAGCGCTAACGACACGTCA CCGATCCCACCGCCAGATTTCAGCGATAAGCCCAAGCGGGAAGTGTCGACCCCACAAGCGATTGCTGAGAGCCCA GCCACGTCTACAAAGTCGGCCATGATGGGCGGGGCAGCAAGTTCAAGCGATGATCTGAAAGCCCAATTGTCCGAG GCTAACGCGCAGATTTTGGCGCTGAAGGAGAAGCTCGCAGATCAGGGCCTGAGGCAGCGGAAGATCGGAGGTGAA ACCGAAAAGGCGCCGGCGCCATTGGTGCAGCAGCAGCCGCAATCTGCCGAGGCAGGCGTGCCAGTGCAGATGGTC GCTGGCTTGTGCCTCCTCAGTTTCCTGATCGCATACTTCTTCTTCTAA |