Protein ID | Ani_SJS100_1|g4457.t1 |
Gene name | |
Location | scaffold_022:322048..324143 |
Strand | + |
Gene length (bp) | 2095 |
Transcript length (bp) | 1962 |
Coding sequence length (bp) | 1962 |
Protein length (aa) | 654 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09531 | Ndc1_Nup | Nucleoporin protein Ndc1-Nup | 5.0E-204 | 16 | 641 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 21 | 40 | 19 |
2 | 50 | 72 | 22 |
3 | 213 | 232 | 19 |
Orthofinder run ID | 3 |
Orthogroup | 4762 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g4457.t1 MAAAQPRPYRRILTSALHRRFVHASALALLVCYVVAFAIGDKSSFLWAWFPIGGCGVRTVLLFLCSLVVFVLRVG QMHIGARTTSSPLSTFKYLVPLDVIQTFGWYLFSAWWFTEIYRWSSSSSAHLELVNRARPHERASLNERAIYLYT YHFLLAVAQSVVHLYYDYDRVFLSVARRVAGSADEDSRQEQSISKRLQSALPQLIKDGMKRSILVSILCPFAYAF VLRRPAWSTTLYFAKLFWDFPRSAASPPGIIPPILGVIVRTLISGGLLVLCWQTANLFFSVFLSKEPLKRGQPLT AEAKDPNGSLLNGLKAKKETVRAFAFWELYFISQRFPDRRKAIFNDIDREEGAVWSQILQAATDVITGVTTRISE AKNPSSGPKPAPVQQSEPVLHSLPRLTDPPKADNIFAPSPKATTRQQKFGEALTTTARAYGNSPDWTPTARAKAR DVLDRASSAMLSPERKQKLLGSSQDLKMLTAPSTSKPENLHPFLAQLLRSPLGRLFRQTYARRLSGIVLGTPHAN LCSVIDATESLTCLLIKSLAEDQYGKVQADVATVVRLLTDTITTLEPFINGGLDAHWTDVNFPPSSNPEAQAAAR RVPDVDLVLDTMKASLKDLLSSFGPYFKNLGLGAKDLRLAKEAAGVVEEDPFN* |
Coding | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTTCTTGTGGGCTTGGTTC CCCATTGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGT CAGATGCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATA CAGACTTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCA CACCTGGAATTGGTGAACCGAGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACC TACCACTTTCTCCTGGCAGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTT GCCAGGAGGGTCGCTGGCTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCA TTGCCGCAGCTCATCAAAGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTC GTCCTCCGGCGCCCGGCATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCA TCCCCTCCCGGCATTATCCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTC TGCTGGCAGACAGCTAACCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACG GCTGAAGCCAAGGATCCCAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCA TTCTGGGAGCTGTACTTCATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAG GAGGGTGCAGTTTGGTCGCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAG GCTAAGAATCCATCATCTGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGG CTGACGGACCCCCCTAAGGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGC GAAGCCCTCACCACCACCGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGC GATGTCTTGGACCGCGCCTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGAC CTCAAGATGCTCACCGCGCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCT CCACTAGGCCGACTCTTCCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAAC CTCTGCTCCGTCATCGACGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGA AAGGTCCAAGCCGACGTAGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAAC GGCGGCCTCGATGCTCACTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGC CGTGTCCCTGATGTCGACCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCT TACTTCAAGAACCTCGGCCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGAT CCCTTTAACTAA |
Transcript | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTTCTTGTGGGCTTGGTTC CCCATTGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGT CAGATGCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATA CAGACTTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCA CACCTGGAATTGGTGAACCGAGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACC TACCACTTTCTCCTGGCAGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTT GCCAGGAGGGTCGCTGGCTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCA TTGCCGCAGCTCATCAAAGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTC GTCCTCCGGCGCCCGGCATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCA TCCCCTCCCGGCATTATCCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTC TGCTGGCAGACAGCTAACCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACG GCTGAAGCCAAGGATCCCAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCA TTCTGGGAGCTGTACTTCATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAG GAGGGTGCAGTTTGGTCGCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAG GCTAAGAATCCATCATCTGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGG CTGACGGACCCCCCTAAGGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGC GAAGCCCTCACCACCACCGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGC GATGTCTTGGACCGCGCCTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGAC CTCAAGATGCTCACCGCGCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCT CCACTAGGCCGACTCTTCCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAAC CTCTGCTCCGTCATCGACGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGA AAGGTCCAAGCCGACGTAGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAAC GGCGGCCTCGATGCTCACTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGC CGTGTCCCTGATGTCGACCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCT TACTTCAAGAACCTCGGCCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGAT CCCTTTAACTAA |
Gene | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTGTAAGTTTACACCAACA CCGAGCGGCGTTTGACAAGCTGTGATCGCTAACCAGCTGTGATATCTCGATAGTCTTGTGGGCTTGGTTCCCCAT TGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGTCAGAT GCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATACAGAC TTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCACACCT GGAATTGGTGAACCGAGCTAGGTATGTTTCCTGCGACGACGAGCTCAAGCGGTTCTCTTGAATTCGCCTAACTAG TTATGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACCTACCACTTTCTCCTGGC AGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTTGCCAGGAGGGTCGCTGG CTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCATTGCCGCAGCTCATCAA AGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTCGTCCTCCGGCGCCCGGC ATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCATCCCCTCCCGGCATTAT CCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTCTGCTGGCAGACAGCTAA CCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACGGCTGAAGCCAAGGATCC CAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCATTCTGGGAGCTGTACTT CATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAGGAGGGTGCAGTTTGGTC GCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAGGCTAAGAATCCATCATC TGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGGCTGACGGACCCCCCTAA GGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGCGAAGCCCTCACCACCAC CGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGCGATGTCTTGGACCGCGC CTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGACCTCAAGATGCTCACCGC GCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCTCCACTAGGCCGACTCTT CCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAACCTCTGCTCCGTCATCGA CGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGAAAGGTCCAAGCCGACGT AGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAACGGCGGCCTCGATGCTCA CTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGCCGTGTCCCTGATGTCGA CCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCTTACTTCAAGAACCTCGG CCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGATCCCTTTAACTAA |