© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4457.t1 |
| Gene name | |
| Location | scaffold_022:322048..324143 |
| Strand | + |
| Gene length (bp) | 2095 |
| Transcript length (bp) | 1962 |
| Coding sequence length (bp) | 1962 |
| Protein length (aa) | 654 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09531 | Ndc1_Nup | Nucleoporin protein Ndc1-Nup | 5.0E-204 | 16 | 641 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 50 | 72 | 22 |
| 3 | 213 | 232 | 19 |
| Orthofinder run ID | 3 |
| Orthogroup | 4762 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4457.t1 MAAAQPRPYRRILTSALHRRFVHASALALLVCYVVAFAIGDKSSFLWAWFPIGGCGVRTVLLFLCSLVVFVLRVG QMHIGARTTSSPLSTFKYLVPLDVIQTFGWYLFSAWWFTEIYRWSSSSSAHLELVNRARPHERASLNERAIYLYT YHFLLAVAQSVVHLYYDYDRVFLSVARRVAGSADEDSRQEQSISKRLQSALPQLIKDGMKRSILVSILCPFAYAF VLRRPAWSTTLYFAKLFWDFPRSAASPPGIIPPILGVIVRTLISGGLLVLCWQTANLFFSVFLSKEPLKRGQPLT AEAKDPNGSLLNGLKAKKETVRAFAFWELYFISQRFPDRRKAIFNDIDREEGAVWSQILQAATDVITGVTTRISE AKNPSSGPKPAPVQQSEPVLHSLPRLTDPPKADNIFAPSPKATTRQQKFGEALTTTARAYGNSPDWTPTARAKAR DVLDRASSAMLSPERKQKLLGSSQDLKMLTAPSTSKPENLHPFLAQLLRSPLGRLFRQTYARRLSGIVLGTPHAN LCSVIDATESLTCLLIKSLAEDQYGKVQADVATVVRLLTDTITTLEPFINGGLDAHWTDVNFPPSSNPEAQAAAR RVPDVDLVLDTMKASLKDLLSSFGPYFKNLGLGAKDLRLAKEAAGVVEEDPFN* |
| Coding | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTTCTTGTGGGCTTGGTTC CCCATTGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGT CAGATGCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATA CAGACTTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCA CACCTGGAATTGGTGAACCGAGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACC TACCACTTTCTCCTGGCAGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTT GCCAGGAGGGTCGCTGGCTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCA TTGCCGCAGCTCATCAAAGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTC GTCCTCCGGCGCCCGGCATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCA TCCCCTCCCGGCATTATCCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTC TGCTGGCAGACAGCTAACCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACG GCTGAAGCCAAGGATCCCAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCA TTCTGGGAGCTGTACTTCATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAG GAGGGTGCAGTTTGGTCGCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAG GCTAAGAATCCATCATCTGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGG CTGACGGACCCCCCTAAGGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGC GAAGCCCTCACCACCACCGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGC GATGTCTTGGACCGCGCCTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGAC CTCAAGATGCTCACCGCGCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCT CCACTAGGCCGACTCTTCCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAAC CTCTGCTCCGTCATCGACGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGA AAGGTCCAAGCCGACGTAGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAAC GGCGGCCTCGATGCTCACTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGC CGTGTCCCTGATGTCGACCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCT TACTTCAAGAACCTCGGCCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGAT CCCTTTAACTAA |
| Transcript | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTTCTTGTGGGCTTGGTTC CCCATTGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGT CAGATGCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATA CAGACTTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCA CACCTGGAATTGGTGAACCGAGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACC TACCACTTTCTCCTGGCAGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTT GCCAGGAGGGTCGCTGGCTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCA TTGCCGCAGCTCATCAAAGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTC GTCCTCCGGCGCCCGGCATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCA TCCCCTCCCGGCATTATCCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTC TGCTGGCAGACAGCTAACCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACG GCTGAAGCCAAGGATCCCAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCA TTCTGGGAGCTGTACTTCATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAG GAGGGTGCAGTTTGGTCGCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAG GCTAAGAATCCATCATCTGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGG CTGACGGACCCCCCTAAGGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGC GAAGCCCTCACCACCACCGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGC GATGTCTTGGACCGCGCCTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGAC CTCAAGATGCTCACCGCGCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCT CCACTAGGCCGACTCTTCCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAAC CTCTGCTCCGTCATCGACGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGA AAGGTCCAAGCCGACGTAGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAAC GGCGGCCTCGATGCTCACTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGC CGTGTCCCTGATGTCGACCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCT TACTTCAAGAACCTCGGCCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGAT CCCTTTAACTAA |
| Gene | >Ani_SJS100_1|g4457.t1 ATGGCTGCAGCACAGCCTCGCCCGTATCGGCGCATCTTGACCTCTGCGCTGCACAGACGATTCGTTCATGCGTCG GCACTGGCGCTTCTGGTCTGCTATGTAGTGGCATTTGCTATTGGCGATAAGTCATCTTGTAAGTTTACACCAACA CCGAGCGGCGTTTGACAAGCTGTGATCGCTAACCAGCTGTGATATCTCGATAGTCTTGTGGGCTTGGTTCCCCAT TGGAGGATGTGGAGTTCGCACAGTTCTTCTCTTCCTCTGCAGTCTCGTTGTCTTCGTCCTCCGTGTTGGTCAGAT GCACATCGGTGCCAGGACAACCTCCTCCCCGCTTAGCACCTTCAAATACCTCGTTCCCCTCGACGTTATACAGAC TTTTGGCTGGTACTTGTTCTCCGCCTGGTGGTTCACTGAAATCTACAGGTGGTCTTCTTCAAGTAGCGCACACCT GGAATTGGTGAACCGAGCTAGGTATGTTTCCTGCGACGACGAGCTCAAGCGGTTCTCTTGAATTCGCCTAACTAG TTATGCTAGACCTCACGAACGAGCAAGCTTAAACGAAAGAGCAATCTACCTTTATACCTACCACTTTCTCCTGGC AGTCGCGCAGTCAGTGGTTCATCTTTACTACGACTACGATCGTGTCTTTCTTTCCGTTGCCAGGAGGGTCGCTGG CTCCGCTGATGAAGATAGCCGGCAGGAGCAATCGATCTCTAAACGCCTCCAGTCAGCATTGCCGCAGCTCATCAA AGATGGGATGAAACGGAGTATCTTGGTTTCCATTCTTTGCCCATTCGCATACGCCTTCGTCCTCCGGCGCCCGGC ATGGAGCACTACACTGTACTTTGCAAAGCTATTCTGGGATTTCCCGAGATCCGCTGCATCCCCTCCCGGCATTAT CCCGCCAATCCTCGGAGTTATCGTGCGAACCTTGATTTCAGGAGGCCTCCTGGTTCTCTGCTGGCAGACAGCTAA CCTCTTTTTCTCCGTGTTCCTCAGCAAAGAGCCGCTCAAGCGAGGCCAGCCCTTGACGGCTGAAGCCAAGGATCC CAACGGCAGCTTGCTGAATGGACTAAAAGCAAAGAAGGAAACCGTTCGCGCTTTTGCATTCTGGGAGCTGTACTT CATCAGCCAGAGATTTCCTGACCGCCGGAAGGCCATCTTCAACGACATCGATCGCGAGGAGGGTGCAGTTTGGTC GCAAATCCTGCAAGCCGCCACAGATGTCATCACGGGCGTTACCACTCGCATCAGCGAGGCTAAGAATCCATCATC TGGCCCTAAGCCTGCACCGGTCCAGCAGTCCGAGCCCGTCCTTCACTCCCTGCCACGGCTGACGGACCCCCCTAA GGCGGACAACATCTTCGCTCCGTCCCCCAAGGCAACAACTCGCCAACAAAAGTTCGGCGAAGCCCTCACCACCAC CGCCAGAGCCTACGGCAACTCCCCTGACTGGACGCCTACCGCACGCGCCAAAGCCCGCGATGTCTTGGACCGCGC CTCCTCCGCCATGCTGAGCCCTGAACGCAAGCAGAAGCTGCTCGGTTCCTCCCAGGACCTCAAGATGCTCACCGC GCCATCAACTAGCAAGCCCGAGAACCTGCACCCCTTCCTCGCTCAGCTCCTCCGCTCTCCACTAGGCCGACTCTT CCGCCAAACCTACGCTCGTCGCCTCTCCGGCATTGTCCTCGGCACACCCCACGCCAACCTCTGCTCCGTCATCGA CGCCACCGAATCCCTCACCTGCCTTCTCATCAAGAGTCTCGCGGAGGACCAATACGGAAAGGTCCAAGCCGACGT AGCCACCGTCGTACGCCTACTGACCGATACCATCACGACCCTCGAACCTTTTATTAACGGCGGCCTCGATGCTCA CTGGACAGACGTCAACTTCCCCCCATCCAGCAACCCGGAGGCACAAGCTGCGGCTCGCCGTGTCCCTGATGTCGA CCTCGTCCTGGACACAATGAAGGCATCCCTCAAGGACCTTCTGTCTTCATTCGGCCCTTACTTCAAGAACCTCGG CCTTGGAGCCAAGGACTTAAGACTGGCCAAGGAAGCAGCCGGTGTCGTGGAAGAGGATCCCTTTAACTAA |