© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4456.t1 |
| Gene name | |
| Location | scaffold_022:320729..321624 |
| Strand | - |
| Gene length (bp) | 895 |
| Transcript length (bp) | 822 |
| Coding sequence length (bp) | 822 |
| Protein length (aa) | 274 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14523 | Syntaxin_2 | Syntaxin-like protein | 9.2E-26 | 37 | 134 |
| PF05739 | SNARE | SNARE domain | 4.0E-13 | 216 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 253 | 272 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4456.t1 MSFDRLNSLEAQPTTFRRSDDPQYRDDPEFHRLTEGLSNQLFTLTSNITRLSDQIALLGTRRDTERVRERVHKLL EDTRGGFRDVAEGIKKVQTWEDVSPSQKWTQQKLSSEFKSTLEEFQTVQRRALEKQRASAAAARTAVDEAEPGSG GDHQPQQQQDQLLEEQPRLANQDEVDFQEALIIEREAEIRNIEQSVGELNELFRDVAHIVHEQGGQLDIISENVE RVGDDTRGANVELRSASRYQKNARNKACCLLVILAVILTIIVLAATLG* |
| Coding | >Ani_SJS100_1|g4456.t1 ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCCCT TCCCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGT CGTGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGA GGTGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTG GACTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAAT GAACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAA CGAGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAAC AAGGCTTGCTGTCTGCTTGTCATTCTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG |
| Transcript | >Ani_SJS100_1|g4456.t1 ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCCCT TCCCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGT CGTGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGA GGTGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTG GACTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAAT GAACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAA CGAGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAAC AAGGCTTGCTGTCTGCTTGTCATTCTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG |
| Gene | >Ani_SJS100_1|g4456.t1 ATGTCGTTTGATCGCTTGAACTCGCTAGAGGCACAGCCTACAACTTTCCGTCGCTCCGACGATCCCCAGTATCGC GATGACCCCGAATTCCATCGTTTGACCGAGGGTCTCTCCAACCAACTGTTTACCCTGACCTCCAACATCACTCGG TTATCCGATCAGATTGCCCTTCTGGGAACGAGGCGAGACACTGAGCGTGTGCGCGAGAGAGTCCACAAGCTCCTG GAGGATACTCGGGGGGGTTTCAGGGATGTCGCAGAAGGGATTAAGAAGGTCCAGACATGGGAGGATGTCAGCGTA TGTTACGCCCATATATAACCCCCCCACTGCGCTGCGACCGAACAAGCAATATTAATGTATTTCTCACCAGCCTTC CCAAAAATGGACTCAGCAGAAGCTATCGTCCGAATTTAAATCTACCCTAGAAGAGTTCCAGACTGTTCAGCGTCG TGCCTTGGAGAAGCAACGGGCATCCGCAGCAGCAGCTCGGACTGCCGTAGACGAAGCGGAGCCTGGTTCCGGAGG TGACCATCAGCCGCAGCAACAGCAAGACCAATTGTTGGAGGAACAGCCCCGCCTTGCGAATCAGGACGAAGTGGA CTTCCAGGAGGCCCTCATTATCGAGCGCGAGGCTGAGATCCGCAACATTGAGCAGAGCGTTGGCGAACTCAATGA ACTGTTCCGGGACGTGGCTCACATTGTCCATGAGCAAGGTGGACAGCTTGATATTATCAGCGAGAACGTTGAACG AGTTGGCGATGACACTCGTGGAGCAAACGTCGAGCTCCGTAGCGCCAGCCGGTACCAGAAGAATGCGCGCAACAA GGCTTGCTGTCTGCTTGTCATTCTTGCTGTTATCCTTACCATCATCGTCCTGGCGGCAACCCTGGGATAG |