© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4385.t1 |
| Gene name | |
| Location | scaffold_022:114834..116976 |
| Strand | + |
| Gene length (bp) | 2142 |
| Transcript length (bp) | 1728 |
| Coding sequence length (bp) | 1728 |
| Protein length (aa) | 576 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09334 | tRNA-synt_1g | tRNA synthetases class I (M) | 2.2E-89 | 57 | 422 |
| PF00133 | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | 1.5E-08 | 44 | 147 |
| PF00133 | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | 1.5E-10 | 285 | 395 |
| PF19303 | Anticodon_3 | Anticodon binding domain of methionyl tRNA ligase | 4.6E-06 | 448 | 541 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0000166 | nucleotide binding | Yes |
| GO:0006418 | tRNA aminoacylation for protein translation | Yes |
| GO:0004812 | aminoacyl-tRNA ligase activity | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0009987 | cellular process | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0016874 | ligase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043038 | amino acid activation | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0005488 | binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0140101 | catalytic activity, acting on a tRNA | No |
| GO:0043039 | tRNA aminoacylation | No |
| GO:0003824 | catalytic activity | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0016875 | ligase activity, forming carbon-oxygen bonds | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4385.t1 MAISRAGFRAASWTGQFLACSRPSWRCVPRATARPATTIRPRRFATAASESASKKPYYVTTPIFYVNAAPHVGHL YTMVLADVIKRWRTLIGDADAQLLTGTDEHGMKIQQAALAAEMDTQAFCDMNYKTFEALANAANMDYNYFIRTTE PAHKEAVQYFWEVLEHRGYVYTAKHEGWYSVSDETFYPQTQVQKSLDPETGHTKMVSIETGKEVEWSSETNYHFR LSAFQERLLDLYKTGFITPTMYTTNVVKSVSEGLQDLSISRPAERLTWGIPVPGDNTQTVYVWLDALVNYLTKAG YPFAPGQGSHLGWPADVHVVGKDIVRFHCVYWPAFLMALDLPLPRNVLVHGHWTMNREKMSKSTGNVVNPFFAIN RFGVDSMRFFLIHQGALVGDADYDNAYIIRDYQKLLQKGLGNLAHRAIGCAKGNLRTYIENGTCGRLPPATPADE AYETMLKDVPKRVAEQMENLNPRAALQEITTLIDQTNKYFHHAEPWKSPNDRQRSIFNVAESLRMAGILLQPVMP TKANELLDMFHVDRTDPAKRSYAAATYGSDADYGVDAKKSILFPPLIVES* |
| Coding | >Ani_SJS100_1|g4385.t1 ATGGCTATCTCGAGGGCAGGTTTTCGTGCGGCATCTTGGACCGGCCAATTCCTGGCCTGCAGTCGCCCATCTTGG AGATGCGTCCCCCGCGCAACTGCCCGCCCAGCGACAACGATCCGTCCGCGTCGATTCGCAACGGCGGCCTCGGAA AGCGCTTCTAAGAAGCCATACTATGTCACGACACCCATTTTCTATGTCAACGCTGCCCCTCATGTCGGTCATCTG TATACTATGGTCCTTGCCGATGTCATCAAGAGATGGCGGACTCTCATCGGAGACGCTGACGCACAATTGCTGACG GGAACGGACGAACATGGCATGAAGATTCAGCAGGCCGCGTTGGCTGCGGAGATGGATACGCAGGCGTTCTGCGAC ATGAATTACAAGACGTTTGAGGCTCTAGCAAATGCTGCGAATATGGACTACAATTACTTTATACGGACAACTGAA CCTGCGCACAAGGAAGCTGTTCAGTATTTTTGGGAAGTGTTGGAGCACCGGGGATACGTTTACACCGCGAAGCAC GAAGGCTGGTACTCGGTTAGCGATGAGACATTCTACCCTCAGACGCAAGTACAAAAGTCGCTGGACCCCGAGACT GGGCATACCAAGATGGTCTCCATTGAGACAGGAAAGGAGGTGGAGTGGTCGTCGGAAACCAACTACCATTTCCGT CTGTCAGCTTTCCAGGAACGTTTGCTCGATCTATACAAAACTGGATTCATTACCCCGACGATGTATACAACCAAT GTTGTCAAATCTGTTTCCGAAGGCCTTCAAGACTTGTCAATCTCTAGACCTGCGGAGCGGCTGACCTGGGGTATT CCGGTTCCCGGCGACAACACACAGACCGTCTATGTCTGGCTAGATGCGCTTGTCAACTACTTGACCAAGGCAGGC TACCCGTTTGCACCCGGCCAAGGAAGCCACCTCGGTTGGCCTGCGGATGTGCATGTCGTCGGTAAGGATATTGTT CGCTTTCACTGCGTATACTGGCCCGCATTCCTCATGGCTCTTGACCTTCCTCTTCCCCGCAATGTACTCGTTCAT GGACATTGGACTATGAACCGTGAGAAGATGTCGAAGTCTACGGGTAATGTGGTGAACCCCTTCTTTGCCATCAAC CGCTTCGGGGTGGATTCCATGCGTTTCTTCCTCATCCACCAAGGTGCATTGGTGGGCGACGCCGACTACGATAAT GCTTACATCATCCGCGACTATCAGAAGCTACTGCAGAAGGGGCTCGGAAACCTTGCACATCGGGCAATCGGCTGT GCCAAGGGTAATCTTAGGACTTACATCGAGAATGGCACGTGCGGCAGACTTCCACCAGCGACTCCGGCCGATGAG GCGTACGAAACAATGCTCAAGGATGTACCCAAGAGGGTAGCAGAGCAAATGGAAAATCTGAACCCCCGTGCTGCC CTGCAAGAAATCACTACCTTAATCGATCAGACCAACAAATACTTCCACCACGCAGAACCATGGAAGAGCCCGAAC GACCGCCAGCGATCGATCTTCAATGTCGCCGAATCACTGCGAATGGCCGGTATCCTCCTGCAGCCTGTCATGCCC ACCAAGGCCAACGAGCTTCTGGACATGTTCCACGTAGACAGAACGGACCCGGCCAAAAGGAGCTATGCGGCGGCG ACGTACGGCTCCGACGCAGACTACGGAGTGGATGCTAAAAAGAGTATCCTATTTCCCCCTCTTATCGTGGAAAGT TAA |
| Transcript | >Ani_SJS100_1|g4385.t1 ATGGCTATCTCGAGGGCAGGTTTTCGTGCGGCATCTTGGACCGGCCAATTCCTGGCCTGCAGTCGCCCATCTTGG AGATGCGTCCCCCGCGCAACTGCCCGCCCAGCGACAACGATCCGTCCGCGTCGATTCGCAACGGCGGCCTCGGAA AGCGCTTCTAAGAAGCCATACTATGTCACGACACCCATTTTCTATGTCAACGCTGCCCCTCATGTCGGTCATCTG TATACTATGGTCCTTGCCGATGTCATCAAGAGATGGCGGACTCTCATCGGAGACGCTGACGCACAATTGCTGACG GGAACGGACGAACATGGCATGAAGATTCAGCAGGCCGCGTTGGCTGCGGAGATGGATACGCAGGCGTTCTGCGAC ATGAATTACAAGACGTTTGAGGCTCTAGCAAATGCTGCGAATATGGACTACAATTACTTTATACGGACAACTGAA CCTGCGCACAAGGAAGCTGTTCAGTATTTTTGGGAAGTGTTGGAGCACCGGGGATACGTTTACACCGCGAAGCAC GAAGGCTGGTACTCGGTTAGCGATGAGACATTCTACCCTCAGACGCAAGTACAAAAGTCGCTGGACCCCGAGACT GGGCATACCAAGATGGTCTCCATTGAGACAGGAAAGGAGGTGGAGTGGTCGTCGGAAACCAACTACCATTTCCGT CTGTCAGCTTTCCAGGAACGTTTGCTCGATCTATACAAAACTGGATTCATTACCCCGACGATGTATACAACCAAT GTTGTCAAATCTGTTTCCGAAGGCCTTCAAGACTTGTCAATCTCTAGACCTGCGGAGCGGCTGACCTGGGGTATT CCGGTTCCCGGCGACAACACACAGACCGTCTATGTCTGGCTAGATGCGCTTGTCAACTACTTGACCAAGGCAGGC TACCCGTTTGCACCCGGCCAAGGAAGCCACCTCGGTTGGCCTGCGGATGTGCATGTCGTCGGTAAGGATATTGTT CGCTTTCACTGCGTATACTGGCCCGCATTCCTCATGGCTCTTGACCTTCCTCTTCCCCGCAATGTACTCGTTCAT GGACATTGGACTATGAACCGTGAGAAGATGTCGAAGTCTACGGGTAATGTGGTGAACCCCTTCTTTGCCATCAAC CGCTTCGGGGTGGATTCCATGCGTTTCTTCCTCATCCACCAAGGTGCATTGGTGGGCGACGCCGACTACGATAAT GCTTACATCATCCGCGACTATCAGAAGCTACTGCAGAAGGGGCTCGGAAACCTTGCACATCGGGCAATCGGCTGT GCCAAGGGTAATCTTAGGACTTACATCGAGAATGGCACGTGCGGCAGACTTCCACCAGCGACTCCGGCCGATGAG GCGTACGAAACAATGCTCAAGGATGTACCCAAGAGGGTAGCAGAGCAAATGGAAAATCTGAACCCCCGTGCTGCC CTGCAAGAAATCACTACCTTAATCGATCAGACCAACAAATACTTCCACCACGCAGAACCATGGAAGAGCCCGAAC GACCGCCAGCGATCGATCTTCAATGTCGCCGAATCACTGCGAATGGCCGGTATCCTCCTGCAGCCTGTCATGCCC ACCAAGGCCAACGAGCTTCTGGACATGTTCCACGTAGACAGAACGGACCCGGCCAAAAGGAGCTATGCGGCGGCG ACGTACGGCTCCGACGCAGACTACGGAGTGGATGCTAAAAAGAGTATCCTATTTCCCCCTCTTATCGTGGAAAGT TAA |
| Gene | >Ani_SJS100_1|g4385.t1 ATGGCTATCTCGAGGGCAGGTTTTCGTGCGGCATCTTGGACCGGCCAATTCCTGGCCTGCAGTCGCCCATCTTGG AGATGCGTCCCCCGCGCAACTGCCCGCCCAGCGACAACGATCCGTCCGCGTCGATTCGCAACGGCGGCCTCGGAA AGCGCTTCTAAGAAGCCATACTATGTCACGACACCCATTTTCTATGTCAACGCTGGTATGACCTCGTCCCATGTT TTATTGTGCTTTCTCGCTCGCCGCTAACGCATTGACTCATATAGCCCCTCATGTCGGTCATCTGTATACTATGGT CCTTGCCGATGTCATCAAGAGATGGCGGACTCTCATCGGAGACGCTGACGCACAATTGCTGACGGGAACGGACGA ACATGGCATGAAGGTACGGGCCAATAACCACTGCCTAGCACAGTATGGCTGATTTTGTAAAGATTCAGCAGGCCG CGTTGGCTGCGGAGATGGATACGCAGGCGTTCTGCGACATGAATTACAAGACGTTTGAGGTAGGCAGCATTCACT ATACTGTCGTGCTCCGGTGCGAAATCGATTCTAACTCCTAAGCTTAGGCTCTAGCAAATGCTGCGAATATGGACT ACAATTACTTTATACGGACAACTGAACCTGCGCACAAGGAAGCTGTTCAGTATTTTTGGGTATGTACTTGGGAAA TACGCCCGGGCGCATGACTCTGAGGCTGACATGTGAGTAGGAAGTGTTGGAGCACCGGGGATACGTTTACACCGC GAAGCACGAAGGCTGGTACTCGGTTAGCGATGAGACATTCTACCCTCAGACGCAAGTACAAAAGTCGCTGGACCC CGAGACTGGGCATACCAAGATGGTAAGCTGCACGCCAACCTATCTGCCAAAACAATCGAAGCTTACCCAGGCAGG TCTCCATTGAGACAGGAAAGGAGGTGGAGTGGTCGTCGGAAACCAACTACCATTTCCGTCTGTCAGCTTTCCAGG AACGTTTGCTCGATCTATACAAAACTGGATTCATTACCCCGACGATGTATACAACCAATGTTGTCAAATCTGTTT CCGAAGGCCTTCAAGACTTGTCAATCTCTAGACCTGCGGAGCGGCTGACCTGGGGTATTCCGGTTCCCGGCGACA ACACACAGACCGTCTATGTCTGGCTAGATGCGCTTGTCAACTACTTGACCAAGGCAGGCTACCCGTTTGCACCCG GCCAAGGAAGCCACCTCGGTTGGCCTGCGGATGTGCATGTCGTCGGTAAGGATATTGTTCGGTGCGTATTCGCCT TCAAGCTTGCCATATACGCGAACCCTTGACTAATTGAGCAACAGCTTTCACTGCGTATACTGGCCCGCATTCCTC ATGGCTCTTGACCTTCCTCTTCCCCGCAATGTACTCGTTCATGGACATTGGACTATGAACCGTGAGAAGATGTCG AAGTCTACGGGTAATGTGGTGAACCCCTTCTTTGCCATCAACCGCTTCGGGGTGGATTCCATGCGTTTCTTCCTC ATCCACCAAGGTGCATTGGTGGGCGACGCCGACTACGATAATGCTTACATCATCCGCGACTATCAGAAGCTACTG CAGAAGGGGCTCGGAAACCTTGCACATCGGGCAATCGGCTGTGCCAAGGGTAATCTTAGGACTTACATCGAGAAT GGCACGTGCGGCAGACTTCCACCAGCGACTCCGGCCGATGAGGCGTACGAAACAATGCTCAAGGATGTACCCAAG AGGGTAGCAGAGCAAATGGAAAATCTGAACCCCCGTGCTGCCCTGCAAGAAATCACTACCTTAATCGATCAGGTA AGGGATAAGGATAGACCCACCCTATGATCGGTGATTATTTCCAGACTTATTCTAACCCGGACCACCCAGACCAAC AAATACTTCCACCACGCAGAACCATGGAAGAGCCCGAACGACCGCCAGCGATCGATCTTCAATGTCGCCGAATCA CTGCGAATGGCCGGTATCCTCCTGCAGCCTGTCATGCCCACCAAGGCCAACGAGCTTCTGGACATGTTCCACGTA GACAGAACGGACCCGGCCAAAAGGAGCTATGCGGCGGCGACGTACGGCTCCGACGCAGACTACGGAGTGGATGCT AAAAAGAGTATCCTATTTCCCCCTCTTATCGTGGAAAGTTAA |