Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g4355.t1
Gene name
Locationscaffold_022:47750..48268
Strand-
Gene length (bp)518
Transcript length (bp)309
Coding sequence length (bp)309
Protein length (aa) 103

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05347 Complex1_LYR Complex 1 protein (LYR family) 2.4E-17 33 91
PF13233 Complex1_LYR_2 Complex1_LYR-like 1.3E-07 35 98

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g4355.t1
MRSSLGLLASVSRSQPSKLRKPTISLDHFIQRQRVISLWREIVRALNKIPSSSTKDELHRYARGEFERNRNITDL
QHIRYLISTGKSEFDMMRRYIDEQVAG*
Coding >Ani_SJS100_1|g4355.t1
ATGCGATCGTCTCTGGGACTTCTGGCTTCTGTATCCCGCAGCCAGCCCTCGAAGCTCAGGAAGCCAACCATTAGC
CTTGATCATTTCATCCAAAGGCAGCGAGTTATCTCTCTATGGCGTGAGATTGTGCGAGCGCTCAATAAAATACCC
AGCTCGTCCACCAAGGATGAACTGCACAGATATGCTCGTGGGGAGTTTGAGCGCAATAGAAACATTACAGACTTG
CAACACATACGATATCTTATCTCGACCGGAAAGTCCGAATTTGATATGATGAGGCGGTATATTGACGAGCAAGTT
GCAGGCTAA
Transcript >Ani_SJS100_1|g4355.t1
ATGCGATCGTCTCTGGGACTTCTGGCTTCTGTATCCCGCAGCCAGCCCTCGAAGCTCAGGAAGCCAACCATTAGC
CTTGATCATTTCATCCAAAGGCAGCGAGTTATCTCTCTATGGCGTGAGATTGTGCGAGCGCTCAATAAAATACCC
AGCTCGTCCACCAAGGATGAACTGCACAGATATGCTCGTGGGGAGTTTGAGCGCAATAGAAACATTACAGACTTG
CAACACATACGATATCTTATCTCGACCGGAAAGTCCGAATTTGATATGATGAGGCGGTATATTGACGAGCAAGTT
GCAGGCTAA
Gene >Ani_SJS100_1|g4355.t1
ATGCGATCGTCTCTGGGACTTCTGGCTTCTGTATCCCGCAGCCAGCCCTCGAAGCTCAGGAAGCCAACCATTAGC
CTTGATCATGTATGTAACCATCGCTAGTCGAGTTGTTCATGCGCTGATATGATCGGTAGTTCATCCAAAGGCAGC
GAGTTATCTCTCTATGGCGTGAGATTGTGCGAGCGCTCAATAGTCAGTTCCCATCTATACGATTTCTAACAATCA
TGTACCATGCTGATGAGGTTGCAGAAATACCCAGCTCGTCCACCAAGGATGAACTGCACAGATATGCTCGTGGGG
AGTTTGAGCGCAATAGAAACATTACAGACTTGGTATGCCTTCCTTGGTATTCTAGTACAGTATCAGACTGATGAG
TACGGACAGCAACACATACGATATCTTATCTCGGTAAGCATCCTGTTTGTTGTTCTATGGACAAGCAGCCTAACT
ATACATAGACCGGAAAGTCCGAATTTGATATGATGAGGCGGTATATTGACGAGCAAGTTGCAGGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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