Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g4354.t1
Gene name
Location	scaffold_022:46882..47559
Strand	+
Gene length (bp)	677
Transcript length (bp)	534
Coding sequence length (bp)	534
Protein length (aa)	178

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04588	HIG_1_N	Hypoxia induced protein conserved region	4.6E-26	30	81

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 68	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	68	87	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g4354.t1 MSEPLPSSFEEHPQFQEETSLQKFRRRLKEEPLIPLGCAATSYALYRAYRSMKAGDSVEMNKMFRARIYAQFFTL IAVVAGGMYYGSERKQRREFEQMVEARKSQEKRDAWLRELEIRDKEDRGWRERHAAIEAAANEAANAKKSFPEQD AARSAIEPSEQKSIGVLIAVKELLSRQ*
Coding	>Ani_SJS100_1\|g4354.t1 ATGAGCGAGCCTCTCCCATCGTCTTTCGAAGAACATCCTCAGTTCCAAGAGGAGACTTCGCTCCAAAAGTTCCGC AGACGTCTCAAGGAAGAGCCTCTGATCCCGCTAGGATGTGCTGCCACTTCCTACGCACTTTACCGGGCCTACCGG TCGATGAAGGCTGGCGACTCCGTCGAGATGAATAAGATGTTCCGTGCTCGTATCTACGCCCAGTTTTTCACCCTT ATCGCCGTGGTCGCCGGAGGCATGTATTACGGTAGCGAGCGGAAGCAACGAAGGGAGTTCGAGCAGATGGTGGAG GCACGCAAGAGCCAGGAAAAGCGGGACGCCTGGCTGCGGGAGTTGGAGATTCGTGACAAGGAAGACAGGGGCTGG CGGGAGCGTCACGCGGCTATTGAAGCCGCGGCGAACGAGGCCGCGAATGCTAAGAAATCGTTCCCTGAGCAGGAT GCTGCTCGCTCTGCTATTGAGCCTTCCGAACAGAAGTCAATCGGGGTACTAATTGCTGTGAAGGAGTTGTTGTCG AGGCAGTGA
Transcript	>Ani_SJS100_1\|g4354.t1 ATGAGCGAGCCTCTCCCATCGTCTTTCGAAGAACATCCTCAGTTCCAAGAGGAGACTTCGCTCCAAAAGTTCCGC AGACGTCTCAAGGAAGAGCCTCTGATCCCGCTAGGATGTGCTGCCACTTCCTACGCACTTTACCGGGCCTACCGG TCGATGAAGGCTGGCGACTCCGTCGAGATGAATAAGATGTTCCGTGCTCGTATCTACGCCCAGTTTTTCACCCTT ATCGCCGTGGTCGCCGGAGGCATGTATTACGGTAGCGAGCGGAAGCAACGAAGGGAGTTCGAGCAGATGGTGGAG GCACGCAAGAGCCAGGAAAAGCGGGACGCCTGGCTGCGGGAGTTGGAGATTCGTGACAAGGAAGACAGGGGCTGG CGGGAGCGTCACGCGGCTATTGAAGCCGCGGCGAACGAGGCCGCGAATGCTAAGAAATCGTTCCCTGAGCAGGAT GCTGCTCGCTCTGCTATTGAGCCTTCCGAACAGAAGTCAATCGGGGTACTAATTGCTGTGAAGGAGTTGTTGTCG AGGCAGTGA
Gene	>Ani_SJS100_1\|g4354.t1 ATGAGCGAGCCTCTCCCATCGTCTTTCGAAGAACATCCGTACGTATTCGGGCTCTCCTTGCTAATACAATTCCTA CACGGGAAGTTCAACTAATCCTAACATCTTTGTTCTTCCAGTCAGTTCCAAGAGGAGACTTCGCTCCAAAAGTTC CGCAGACGTCTCAAGGAAGAGCCTCTGATCCCGCTAGGTAGGCAGGCCATTGAAGCTCGGACGCCACATATCTTG AACTTAGCTAACTTACTATAACGCCAGGATGTGCTGCCACTTCCTACGCACTTTACCGGGCCTACCGGTCGATGA AGGCTGGCGACTCCGTCGAGATGAATAAGATGTTCCGTGCTCGTATCTACGCCCAGTTTTTCACCCTTATCGCCG TGGTCGCCGGAGGCATGTATTACGGTAGCGAGCGGAAGCAACGAAGGGAGTTCGAGCAGATGGTGGAGGCACGCA AGAGCCAGGAAAAGCGGGACGCCTGGCTGCGGGAGTTGGAGATTCGTGACAAGGAAGACAGGGGCTGGCGGGAGC GTCACGCGGCTATTGAAGCCGCGGCGAACGAGGCCGCGAATGCTAAGAAATCGTTCCCTGAGCAGGATGCTGCTC GCTCTGCTATTGAGCCTTCCGAACAGAAGTCAATCGGGGTACTAATTGCTGTGAAGGAGTTGTTGTCGAGGCAGT GA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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