Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g4223.t1
Gene name
Location	scaffold_021:47170..47745
Strand	-
Gene length (bp)	575
Transcript length (bp)	417
Coding sequence length (bp)	417
Protein length (aa)	139

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13233	Complex1_LYR_2	Complex1_LYR-like	1.1E-19	35	117
PF05347	Complex1_LYR	Complex 1 protein (LYR family)	2.6E-10	35	88

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g4223.t1 MSFLRFTPTAARRLATPSTFGSKSSLSETLALLPPLQLYRRILRVHRKKLDPEMRILGDGYVKSEFRAHRNVDNP LHIIGFLTEWQLYAQKLEGDAWIGEKLDKSKLDKMSDQQIGQLYELMQAIQNKDGEGEGGEKQ*
Coding	>Ani_SJS100_1\|g4223.t1 ATGTCCTTCCTACGCTTCACCCCCACGGCAGCCCGCCGCCTCGCCACGCCCTCCACCTTCGGCTCCAAATCCAGT CTTTCCGAGACCTTGGCCCTGCTACCGCCGCTGCAGCTCTACCGTCGCATTCTCCGCGTGCACCGCAAGAAACTC GATCCGGAGATGCGGATTCTGGGTGATGGCTATGTAAAGAGTGAATTCCGGGCTCATCGGAATGTGGATAATCCG TTGCATATTATTGGTTTCCTCACGGAATGGCAATTATATGCGCAGAAATTGGAGGGAGATGCGTGGATTGGGGAG AAGTTGGATAAGAGTAAATTGGATAAGATGAGTGATCAGCAAATCGGGCAGCTGTATGAGCTTATGCAGGCGATT CAGAATAAGGATGGGGAGGGAGAGGGTGGAGAGAAGCAATGA
Transcript	>Ani_SJS100_1\|g4223.t1 ATGTCCTTCCTACGCTTCACCCCCACGGCAGCCCGCCGCCTCGCCACGCCCTCCACCTTCGGCTCCAAATCCAGT CTTTCCGAGACCTTGGCCCTGCTACCGCCGCTGCAGCTCTACCGTCGCATTCTCCGCGTGCACCGCAAGAAACTC GATCCGGAGATGCGGATTCTGGGTGATGGCTATGTAAAGAGTGAATTCCGGGCTCATCGGAATGTGGATAATCCG TTGCATATTATTGGTTTCCTCACGGAATGGCAATTATATGCGCAGAAATTGGAGGGAGATGCGTGGATTGGGGAG AAGTTGGATAAGAGTAAATTGGATAAGATGAGTGATCAGCAAATCGGGCAGCTGTATGAGCTTATGCAGGCGATT CAGAATAAGGATGGGGAGGGAGAGGGTGGAGAGAAGCAATGA
Gene	>Ani_SJS100_1\|g4223.t1 ATGTCCTTCCTACGCTTCACCCCCACGGCAGCCCGCCGCCTCGCCACGCCCTCCACCTTCGGCTCCAAATCCAGT CTTTCCGAGACCTTGGCCCTGCTACCGCCGCTGCAGCTCTACCGTCGCATTCTCCGCGTGCACCGCAAGAAACTC GATCCGGAGATGCGGATTCTGGGTGATGGCTATGTAAAGAGTGAATTCCGGGCTCATCGGAATGTGGATAATCCG TTGCATATTGTATACCATACCCACTCTCATAATCTAGTTCGTGTCTGGTCTTGTGGATAGCTAATGACATGGTGA TTTGTGGCAGATTGGTTTCCTCACGGAATGGCAATTATATGCGCAGAAATTGGAGGGAGATGCGTGGATTGGGGA GAAGTTGGATAAGAGTAAATTGGATAAGATGAGTGGTGAGGATACTTCTTCTTCTTCTCTTTTGTTTCTGCTTGG GATGGTCGTGTTGGCTTTGAGTGTGTACTAACTGGAAGGCAGATCAGCAAATCGGGCAGCTGTATGAGCTTATGC AGGCGATTCAGAATAAGGATGGGGAGGGAGAGGGTGGAGAGAAGCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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