© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4187.t1 |
| Gene name | |
| Location | scaffold_020:385418..386371 |
| Strand | - |
| Gene length (bp) | 953 |
| Transcript length (bp) | 903 |
| Coding sequence length (bp) | 903 |
| Protein length (aa) | 301 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 4.0E-09 | 60 | 119 |
| PF04193 | PQ-loop | PQ loop repeat | 9.5E-09 | 176 | 230 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 75 | 17 |
| 2 | 90 | 112 | 22 |
| 3 | 125 | 142 | 17 |
| 4 | 147 | 164 | 17 |
| 5 | 232 | 254 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4187.t1 MDAIQKTIVDPLQPLLRPVVSALPEPVHDAIISLIGSSCHNSLVVDLDVSKDPACTSLAISKALGIAIVGASGIV KVPQILKLIGSRSSAGVSFVSYALETASLLITLSYSVRNQFPFSTFGETALIAVQDVVVGVLVLTFAGRSSAAAA FIAVVAASVYALLFDQTLVDAQTMAMLQAGAGALGVASKAPQIYTIWREGGTGQLSAFAVFNYLAGSLSRIFTTL QEVDDKLILYGFIAGFTLNLILAGQMLYYWNSPAKSQKKEKPVAAPTPAKTPAAATSSGVSPKPSGKTPTTRRRG * |
| Coding | >Ani_SJS100_1|g4187.t1 ATGGACGCGATCCAGAAAACCATCGTCGATCCCCTCCAACCCCTCCTCCGCCCCGTCGTTTCGGCCTTGCCCGAA CCGGTTCACGATGCGATCATTTCGCTGATCGGCTCCTCCTGCCACAACAGCCTCGTGGTCGATCTTGACGTGAGC AAGGACCCGGCCTGCACCTCCCTTGCTATTTCGAAGGCCCTTGGTATTGCTATCGTCGGAGCTAGCGGCATTGTC AAGGTGCCCCAGATCCTCAAGCTGATCGGCTCCCGCTCATCTGCCGGTGTTTCCTTCGTTTCGTACGCCCTCGAG ACCGCCAGTCTTCTGATTACGCTGTCCTACAGCGTGCGCAACCAGTTCCCGTTCAGCACCTTCGGCGAGACGGCT TTGATTGCGGTACAAGATGTAGTGGTGGGCGTGCTGGTGTTGACATTTGCGGGCCGGTCTTCCGCTGCGGCGGCC TTCATTGCCGTCGTGGCAGCAAGCGTGTATGCGCTGCTTTTTGATCAGACTCTGGTGGATGCGCAGACAATGGCT ATGCTGCAGGCTGGAGCTGGAGCTCTGGGTGTTGCGAGCAAGGCGCCTCAAATCTATACTATCTGGCGTGAGGGT GGCACTGGCCAGCTGAGTGCTTTTGCAGTCTTCAACTATCTCGCTGGTTCCCTGTCTCGCATCTTCACCACCCTC CAAGAGGTTGACGACAAGCTGATCCTGTACGGCTTCATTGCCGGGTTCACTCTCAACCTCATTCTGGCCGGCCAA ATGCTGTACTACTGGAACAGCCCGGCCAAGTCCCAGAAGAAGGAGAAGCCCGTGGCAGCACCTACTCCCGCCAAG ACGCCAGCTGCTGCCACCAGCTCGGGGGTGTCCCCAAAGCCATCAGGCAAGACGCCCACCACTCGACGCCGGGGC TAG |
| Transcript | >Ani_SJS100_1|g4187.t1 ATGGACGCGATCCAGAAAACCATCGTCGATCCCCTCCAACCCCTCCTCCGCCCCGTCGTTTCGGCCTTGCCCGAA CCGGTTCACGATGCGATCATTTCGCTGATCGGCTCCTCCTGCCACAACAGCCTCGTGGTCGATCTTGACGTGAGC AAGGACCCGGCCTGCACCTCCCTTGCTATTTCGAAGGCCCTTGGTATTGCTATCGTCGGAGCTAGCGGCATTGTC AAGGTGCCCCAGATCCTCAAGCTGATCGGCTCCCGCTCATCTGCCGGTGTTTCCTTCGTTTCGTACGCCCTCGAG ACCGCCAGTCTTCTGATTACGCTGTCCTACAGCGTGCGCAACCAGTTCCCGTTCAGCACCTTCGGCGAGACGGCT TTGATTGCGGTACAAGATGTAGTGGTGGGCGTGCTGGTGTTGACATTTGCGGGCCGGTCTTCCGCTGCGGCGGCC TTCATTGCCGTCGTGGCAGCAAGCGTGTATGCGCTGCTTTTTGATCAGACTCTGGTGGATGCGCAGACAATGGCT ATGCTGCAGGCTGGAGCTGGAGCTCTGGGTGTTGCGAGCAAGGCGCCTCAAATCTATACTATCTGGCGTGAGGGT GGCACTGGCCAGCTGAGTGCTTTTGCAGTCTTCAACTATCTCGCTGGTTCCCTGTCTCGCATCTTCACCACCCTC CAAGAGGTTGACGACAAGCTGATCCTGTACGGCTTCATTGCCGGGTTCACTCTCAACCTCATTCTGGCCGGCCAA ATGCTGTACTACTGGAACAGCCCGGCCAAGTCCCAGAAGAAGGAGAAGCCCGTGGCAGCACCTACTCCCGCCAAG ACGCCAGCTGCTGCCACCAGCTCGGGGGTGTCCCCAAAGCCATCAGGCAAGACGCCCACCACTCGACGCCGGGGC TAG |
| Gene | >Ani_SJS100_1|g4187.t1 ATGGACGCGATCCAGAAAACCATCGTCGATCCCCTCCAACCCCTCCTCCGCCCCGTCGTTTCGGCCTTGCCCGAA CCGGTTCACGATGCGATCATTTCGCTGATCGGCTCCTCCTGCCACAACAGCCTCGTGGTCGATCTTGACGTGAGC AAGGACCCGGCCTGCACCTCCCTTGCTATTTCGAAGGCCCTTGGTATTGCTATCGTCGGAGCTAGCGGCATTGTC AAGGTGCCCCAGATCCTCAAGCTGATCGGCTCCCGCTCATCTGCCGGTGTTTCCTTCGTTTCGTACGCCCTCGAG ACCGCCAGTCTTCTGATTACGCTGTCCTACAGCGTGCGCAACCAGTTCCCGTTCAGCACCTTCGGCGAGACGGCT TTGATTGCGGTACAAGATGTAGTGGTGGGCGTGCTGGTGTTGACATTTGCGGGCCGGTCTTCCGCTGCGGCGGCC TTCATTGCCGTCGTGGCAGCAAGCGTGTATGCGCTGCTTTTTGATCAGACTCTGGTGGATGCGCAGACAATGGCT ATGCTGCAGGCTGGAGCTGGAGCTCTGGGTGTTGCGAGCAAGGCGCCTCAAATCTATACTATCTGGCGTGAGGGT GGCACTGGCCAGCTGAGTGCTTTTGCAGTAGGTGCACCTCGTTACTTGTCGGTAATTGTTTACTAACACATAGTC AGGTCTTCAACTATCTCGCTGGTTCCCTGTCTCGCATCTTCACCACCCTCCAAGAGGTTGACGACAAGCTGATCC TGTACGGCTTCATTGCCGGGTTCACTCTCAACCTCATTCTGGCCGGCCAAATGCTGTACTACTGGAACAGCCCGG CCAAGTCCCAGAAGAAGGAGAAGCCCGTGGCAGCACCTACTCCCGCCAAGACGCCAGCTGCTGCCACCAGCTCGG GGGTGTCCCCAAAGCCATCAGGCAAGACGCCCACCACTCGACGCCGGGGCTAG |