© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g4155.t1 |
| Gene name | |
| Location | scaffold_020:271164..272109 |
| Strand | + |
| Gene length (bp) | 945 |
| Transcript length (bp) | 876 |
| Coding sequence length (bp) | 876 |
| Protein length (aa) | 292 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08660 | Alg14 | Oligosaccharide biosynthesis protein Alg14 like | 4.2E-58 | 52 | 289 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | Yes |
| GO:0006629 | lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4155.t1 MESWLSWTSLFLAIGSAAIICIFTLILLGHALAKSQNSQVPKWRPQHCPVHLLVVLGSGGHTAEMFSMLRRMNLD PSKFTHRTYIVSSGDNFSATKAVEFETTHISHHVNANANAKTTSPDSYTIVTVPRARRVHQSYLTAPFSTLNSFW SCLLVLRGLHPDQTRHSRTAPHLPSPYPDLILTNGPATAVCVIVAARLLRLWLFLCGAFSPFAPERRTLESDSVT APVPAPGTYQLRTIFVESWARVTTLSLSGKLLLPLTDRFLVQWPALAGKKAWPGMRETEYMGTLMD* |
| Coding | >Ani_SJS100_1|g4155.t1 ATGGAGTCATGGCTATCCTGGACCAGCCTATTCCTGGCTATCGGCTCTGCTGCCATAATCTGCATATTTACGCTC ATTCTTCTCGGCCACGCCCTCGCGAAATCACAAAACAGCCAAGTTCCCAAATGGCGCCCACAACACTGCCCCGTC CATCTCCTAGTCGTCCTCGGTAGCGGTGGCCACACAGCCGAGATGTTCTCCATGCTCCGGCGGATGAACCTAGAC CCGTCCAAATTCACTCATCGAACCTATATCGTAAGCTCCGGAGACAACTTCAGCGCGACAAAAGCCGTTGAGTTC GAAACAACCCATATAAGTCATCATGTCAATGCCAATGCCAATGCCAAAACCACATCACCAGACTCCTACACCATA GTTACGGTACCCCGCGCCCGTCGCGTACACCAATCCTACCTGACTGCGCCTTTCTCTACACTCAACTCCTTCTGG TCTTGTCTCTTGGTCCTGCGTGGTCTTCATCCGGATCAGACCCGGCATTCTCGTACAGCGCCGCATCTACCTTCT CCGTATCCGGACCTTATTCTCACCAATGGCCCTGCCACCGCGGTTTGTGTTATCGTGGCCGCCCGGCTTCTTCGT CTATGGCTGTTCTTATGCGGGGCCTTTTCTCCTTTTGCGCCCGAAAGAAGGACATTAGAAAGTGACTCTGTGACA GCGCCAGTGCCAGCGCCGGGTACCTACCAGCTGCGCACAATCTTCGTAGAATCGTGGGCTCGCGTGACGACATTG AGTTTGTCGGGTAAGCTCCTGTTGCCTCTGACAGATCGATTCCTGGTGCAGTGGCCCGCATTAGCAGGCAAGAAG GCGTGGCCGGGAATGAGGGAGACAGAATACATGGGTACACTCATGGATTGA |
| Transcript | >Ani_SJS100_1|g4155.t1 ATGGAGTCATGGCTATCCTGGACCAGCCTATTCCTGGCTATCGGCTCTGCTGCCATAATCTGCATATTTACGCTC ATTCTTCTCGGCCACGCCCTCGCGAAATCACAAAACAGCCAAGTTCCCAAATGGCGCCCACAACACTGCCCCGTC CATCTCCTAGTCGTCCTCGGTAGCGGTGGCCACACAGCCGAGATGTTCTCCATGCTCCGGCGGATGAACCTAGAC CCGTCCAAATTCACTCATCGAACCTATATCGTAAGCTCCGGAGACAACTTCAGCGCGACAAAAGCCGTTGAGTTC GAAACAACCCATATAAGTCATCATGTCAATGCCAATGCCAATGCCAAAACCACATCACCAGACTCCTACACCATA GTTACGGTACCCCGCGCCCGTCGCGTACACCAATCCTACCTGACTGCGCCTTTCTCTACACTCAACTCCTTCTGG TCTTGTCTCTTGGTCCTGCGTGGTCTTCATCCGGATCAGACCCGGCATTCTCGTACAGCGCCGCATCTACCTTCT CCGTATCCGGACCTTATTCTCACCAATGGCCCTGCCACCGCGGTTTGTGTTATCGTGGCCGCCCGGCTTCTTCGT CTATGGCTGTTCTTATGCGGGGCCTTTTCTCCTTTTGCGCCCGAAAGAAGGACATTAGAAAGTGACTCTGTGACA GCGCCAGTGCCAGCGCCGGGTACCTACCAGCTGCGCACAATCTTCGTAGAATCGTGGGCTCGCGTGACGACATTG AGTTTGTCGGGTAAGCTCCTGTTGCCTCTGACAGATCGATTCCTGGTGCAGTGGCCCGCATTAGCAGGCAAGAAG GCGTGGCCGGGAATGAGGGAGACAGAATACATGGGTACACTCATGGATTGA |
| Gene | >Ani_SJS100_1|g4155.t1 ATGGAGTCATGGCTATCCTGGACCAGCCTATTCCTGGCTATCGGCTCTGCTGCCATAATCTGCATATTTACGCTC ATTGTAAGCAATACCCTGCACATCATTTCCCCCATACAACCAAAGCTAATCCACCCACTCACTAACTTTCAGCTT CTCGGCCACGCCCTCGCGAAATCACAAAACAGCCAAGTTCCCAAATGGCGCCCACAACACTGCCCCGTCCATCTC CTAGTCGTCCTCGGTAGCGGTGGCCACACAGCCGAGATGTTCTCCATGCTCCGGCGGATGAACCTAGACCCGTCC AAATTCACTCATCGAACCTATATCGTAAGCTCCGGAGACAACTTCAGCGCGACAAAAGCCGTTGAGTTCGAAACA ACCCATATAAGTCATCATGTCAATGCCAATGCCAATGCCAAAACCACATCACCAGACTCCTACACCATAGTTACG GTACCCCGCGCCCGTCGCGTACACCAATCCTACCTGACTGCGCCTTTCTCTACACTCAACTCCTTCTGGTCTTGT CTCTTGGTCCTGCGTGGTCTTCATCCGGATCAGACCCGGCATTCTCGTACAGCGCCGCATCTACCTTCTCCGTAT CCGGACCTTATTCTCACCAATGGCCCTGCCACCGCGGTTTGTGTTATCGTGGCCGCCCGGCTTCTTCGTCTATGG CTGTTCTTATGCGGGGCCTTTTCTCCTTTTGCGCCCGAAAGAAGGACATTAGAAAGTGACTCTGTGACAGCGCCA GTGCCAGCGCCGGGTACCTACCAGCTGCGCACAATCTTCGTAGAATCGTGGGCTCGCGTGACGACATTGAGTTTG TCGGGTAAGCTCCTGTTGCCTCTGACAGATCGATTCCTGGTGCAGTGGCCCGCATTAGCAGGCAAGAAGGCGTGG CCGGGAATGAGGGAGACAGAATACATGGGTACACTCATGGATTGA |