© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g4067.t1 |
| Gene name | |
| Location | scaffold_020:16025..17594 |
| Strand | - |
| Gene length (bp) | 1569 |
| Transcript length (bp) | 1383 |
| Coding sequence length (bp) | 1383 |
| Protein length (aa) | 461 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00009 | GTP_EFTU | Elongation factor Tu GTP binding domain | 4.4E-53 | 6 | 233 |
| PF03143 | GTP_EFTU_D3 | Elongation factor Tu C-terminal domain | 3.7E-32 | 336 | 440 |
| PF03144 | GTP_EFTU_D2 | Elongation factor Tu domain 2 | 1.9E-13 | 259 | 324 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003924 | GTPase activity | Yes |
| GO:0005525 | GTP binding | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0003674 | molecular_function | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0043168 | anion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g4067.t1 MGKEDKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITID IALWKFQTGKYEVTVIDAPGHRDFIKNMITGTSQADCAILIIASGTGEFEAGISKDGQTREHALLAFTLGVRQLI VALNKMDTCKWSEDRYNEIVKETSNFIKKVGYNPKGVPFVPISGFNGDNMLEPSPNCPWYKGWEKETKAGKVTGK TLLEAIDAIEPPVRPSNKPLRLPLQDVYKISGIGTVPVGRVETGIIAPGMVVTFAPANVTTEVKSVEMHHQQLKE GVPGDNVGFNVKNVSVKEVRRGNVAGDSKNDPPLGCESFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELL EKIDRRTGKSVESSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEKKEGGSGKV TKAAQKAGKK* |
| Coding | >Ani_SJS100_1|g4067.t1 ATGGGTAAGGAGGACAAGACTCACATCAACATCGTCGTTATCGGCCACGTCGATTCCGGCAAGTCCACCACCACT GGTCACCTGATCTACAAGTGCGGTGGTATCGACCAGCGTACCATCGAGAAGTTCGAGAAGGAAGCCGCCGAGCTC GGTAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGTCCGAGCGTGAGCGTGGTATCACCATCGAC ATTGCCCTCTGGAAGTTCCAGACTGGCAAGTATGAGGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCATC AAGAACATGATCACTGGTACCTCCCAGGCTGACTGCGCTATCCTCATCATTGCCTCCGGTACTGGTGAGTTCGAG GCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCTCTGCTTGCTTTCACCCTCGGTGTCCGTCAGCTCATT GTTGCCCTCAACAAGATGGACACCTGCAAGTGGTCCGAGGACCGTTACAACGAAATCGTTAAGGAGACCTCCAAC TTCATCAAGAAGGTCGGCTACAACCCCAAGGGTGTTCCTTTCGTCCCCATCTCCGGTTTCAACGGTGACAACATG CTCGAGCCCTCCCCCAACTGCCCCTGGTACAAGGGTTGGGAGAAGGAGACCAAGGCCGGCAAGGTCACCGGTAAG ACCCTCCTCGAGGCCATCGACGCCATCGAGCCCCCCGTCCGTCCCTCCAACAAGCCCCTCCGTCTTCCCCTCCAG GATGTCTACAAGATCTCCGGTATTGGAACTGTTCCCGTCGGTCGTGTCGAGACCGGTATCATTGCCCCTGGTATG GTCGTGACCTTCGCTCCCGCCAACGTCACCACTGAAGTCAAGTCCGTTGAGATGCACCACCAGCAGCTCAAGGAG GGTGTCCCCGGTGACAACGTTGGTTTCAACGTCAAGAACGTTTCCGTCAAGGAGGTTCGCCGTGGTAACGTTGCC GGTGACTCCAAGAACGACCCCCCTCTTGGCTGTGAGAGCTTCACCGCCCAGGTCATCGTCCTCAACCACCCCGGT CAGGTCGGCGCTGGTTACGCTCCCGTCCTGGACTGCCACACTGCTCACATTGCTTGCAAGTTCGCTGAGCTCCTT GAGAAGATTGACCGCCGTACCGGAAAGTCTGTTGAATCTTCCCCCAAGTTCATCAAGTCCGGTGACGCTGCCATC GTCAAGATGATTCCCTCCAAGCCCATGTGTGTTGAGGCTTTCACTGACTACCCCCCTCTTGGTCGTTTCGCTGTC CGCGACATGCGCCAGACTGTTGCTGTCGGTGTTATCAAGGCTGTTGAGAAGAAGGAGGGTGGTTCCGGTAAGGTT ACCAAGGCCGCCCAGAAGGCCGGTAAGAAATAA |
| Transcript | >Ani_SJS100_1|g4067.t1 ATGGGTAAGGAGGACAAGACTCACATCAACATCGTCGTTATCGGCCACGTCGATTCCGGCAAGTCCACCACCACT GGTCACCTGATCTACAAGTGCGGTGGTATCGACCAGCGTACCATCGAGAAGTTCGAGAAGGAAGCCGCCGAGCTC GGTAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGTCCGAGCGTGAGCGTGGTATCACCATCGAC ATTGCCCTCTGGAAGTTCCAGACTGGCAAGTATGAGGTCACCGTCATTGACGCCCCCGGTCACCGTGACTTCATC AAGAACATGATCACTGGTACCTCCCAGGCTGACTGCGCTATCCTCATCATTGCCTCCGGTACTGGTGAGTTCGAG GCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCTCTGCTTGCTTTCACCCTCGGTGTCCGTCAGCTCATT GTTGCCCTCAACAAGATGGACACCTGCAAGTGGTCCGAGGACCGTTACAACGAAATCGTTAAGGAGACCTCCAAC TTCATCAAGAAGGTCGGCTACAACCCCAAGGGTGTTCCTTTCGTCCCCATCTCCGGTTTCAACGGTGACAACATG CTCGAGCCCTCCCCCAACTGCCCCTGGTACAAGGGTTGGGAGAAGGAGACCAAGGCCGGCAAGGTCACCGGTAAG ACCCTCCTCGAGGCCATCGACGCCATCGAGCCCCCCGTCCGTCCCTCCAACAAGCCCCTCCGTCTTCCCCTCCAG GATGTCTACAAGATCTCCGGTATTGGAACTGTTCCCGTCGGTCGTGTCGAGACCGGTATCATTGCCCCTGGTATG GTCGTGACCTTCGCTCCCGCCAACGTCACCACTGAAGTCAAGTCCGTTGAGATGCACCACCAGCAGCTCAAGGAG GGTGTCCCCGGTGACAACGTTGGTTTCAACGTCAAGAACGTTTCCGTCAAGGAGGTTCGCCGTGGTAACGTTGCC GGTGACTCCAAGAACGACCCCCCTCTTGGCTGTGAGAGCTTCACCGCCCAGGTCATCGTCCTCAACCACCCCGGT CAGGTCGGCGCTGGTTACGCTCCCGTCCTGGACTGCCACACTGCTCACATTGCTTGCAAGTTCGCTGAGCTCCTT GAGAAGATTGACCGCCGTACCGGAAAGTCTGTTGAATCTTCCCCCAAGTTCATCAAGTCCGGTGACGCTGCCATC GTCAAGATGATTCCCTCCAAGCCCATGTGTGTTGAGGCTTTCACTGACTACCCCCCTCTTGGTCGTTTCGCTGTC CGCGACATGCGCCAGACTGTTGCTGTCGGTGTTATCAAGGCTGTTGAGAAGAAGGAGGGTGGTTCCGGTAAGGTT ACCAAGGCCGCCCAGAAGGCCGGTAAGAAATAA |
| Gene | >Ani_SJS100_1|g4067.t1 ATGGGGTGAGTCAAGACAACGATCATCATCTGACAAAGGAAGGACATGGGCTAACGGATATCTTCTACAACAGTA AGGAGGACAAGACTCACATCAACATCGTCGTTATCGGCCACGTCGATTCCGGCAAGTCCACCACCACTGGTCACC TGATCTACAAGTGCGGTGGTATCGACCAGCGTACCATCGAGAAGTTCGAGAAGGTAAGGAGGATTATACATCTGA AAGAAGAATATCAAGACATGGTGCTAACAACATCCTACAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTA CGCTTGGGTTCTTGACAAGCTCAAGTCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCCA GACTGGCAAGTATGAGGTCACCGTCATTGGTAAGTACTATCACAGAGTTCTCTCGATCAAATTAACATACTAACG TACATGATAGACGCCCCCGGTCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCTGACTGCGCT ATCCTCATCATTGCCTCCGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCT CTGCTTGCTTTCACCCTCGGTGTCCGTCAGCTCATTGTTGCCCTCAACAAGATGGACACCTGCAAGTGGTCCGAG GACCGTTACAACGAAATCGTTAAGGAGACCTCCAACTTCATCAAGAAGGTCGGCTACAACCCCAAGGGTGTTCCT TTCGTCCCCATCTCCGGTTTCAACGGTGACAACATGCTCGAGCCCTCCCCCAACTGCCCCTGGTACAAGGGTTGG GAGAAGGAGACCAAGGCCGGCAAGGTCACCGGTAAGACCCTCCTCGAGGCCATCGACGCCATCGAGCCCCCCGTC CGTCCCTCCAACAAGCCCCTCCGTCTTCCCCTCCAGGATGTCTACAAGATCTCCGGTATTGGAACTGTTCCCGTC GGTCGTGTCGAGACCGGTATCATTGCCCCTGGTATGGTCGTGACCTTCGCTCCCGCCAACGTCACCACTGAAGTC AAGTCCGTTGAGATGCACCACCAGCAGCTCAAGGAGGGTGTCCCCGGTGACAACGTTGGTTTCAACGTCAAGAAC GTTTCCGTCAAGGAGGTTCGCCGTGGTAACGTTGCCGGTGACTCCAAGAACGACCCCCCTCTTGGCTGTGAGAGC TTCACCGCCCAGGTCATCGTCCTCAACCACCCCGGTCAGGTCGGCGCTGGTTACGCTCCCGTCCTGGACTGCCAC ACTGCTCACATTGCTTGCAAGTTCGCTGAGCTCCTTGAGAAGATTGACCGCCGTACCGGAAAGTCTGTTGAATCT TCCCCCAAGTTCATCAAGTCCGGTGACGCTGCCATCGTCAAGATGATTCCCTCCAAGCCCATGTGTGTTGAGGCT TTCACTGACTACCCCCCTCTTGGTCGTTTCGCTGTCCGCGACATGCGCCAGACTGTTGCTGTCGGTGTTATCAAG GCTGTTGAGAAGAAGGAGGGTGGTTCCGGTAAGGTTACCAAGGCCGCCCAGAAGGCCGGTAAGAAATAA |