© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g3971.t1 |
| Gene name | |
| Location | scaffold_019:110381..111594 |
| Strand | + |
| Gene length (bp) | 1213 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 927 |
| Protein length (aa) | 309 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00804 | Syntaxin | Syntaxin | 1.3E-11 | 98 | 240 |
| PF05739 | SNARE | SNARE domain | 3.3E-11 | 244 | 294 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 280 | 302 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3971.t1 MSYGGNQGGYGQYNPYGQQDANPYSDSNAMEQGNGSYEMGSYNQPADATTLLNKCREINDGIADLRAKREGQLAA AQNALLDSSTGKEDQVARQTLDYIEDEVNNGFRYLRDLLKKVKQTPGSGDSRVQTQIDVTSRNLRREIEQYQRCQ SDFQKRLREQVRRRYEIANPEASPEEIEQGVDNVLLGQEQSFQVTGSRTRQANDARQAALERSAAIRKIEQDMME LGRLYQEVAELVHQQEPAVEQINQDADNVAQNVSNANNQITEAIASARRARKWKWYALLVVILIIAIVVGVAVGV TEANKSSK* |
| Coding | >Ani_SJS100_1|g3971.t1 ATGAGTTACGGTGGAAACCAGGGTGGCTACGGCCAGTATAACCCCTATGGCCAGCAAGATGCCAACCCCTACAGC GACTCCAATGCCATGGAGCAGGGCAACGGTAGCTACGAAATGGGCTCCTACAACCAGCCTGCCGACGCGACGACG CTGCTGAACAAGTGCAGAGAGATCAACGACGGTATTGCGGATCTCCGCGCCAAGCGCGAGGGCCAGCTTGCGGCC GCCCAGAACGCCTTGCTCGATTCGAGTACCGGAAAGGAGGACCAGGTCGCTCGCCAGACTCTGGACTACATCGAG GATGAAGTGAACAACGGATTCCGTTACCTCCGCGATCTTCTGAAGAAGGTCAAGCAGACCCCCGGCTCCGGAGAC AGCCGTGTGCAGACCCAGATCGACGTCACTAGCCGGAACCTCCGTCGAGAGATCGAACAGTACCAGAGATGCCAG TCCGACTTCCAGAAGCGCCTGCGGGAGCAGGTTCGCAGACGTTATGAGATCGCCAACCCCGAAGCTTCCCCCGAG GAGATCGAGCAGGGTGTTGACAATGTCTTGTTGGGCCAGGAGCAGAGCTTCCAGGTTACTGGTAGCCGGACTAGA CAGGCCAACGACGCTAGGCAGGCCGCTTTGGAGCGATCGGCCGCCATTCGCAAGATCGAGCAGGATATGATGGAG CTTGGCCGCCTGTACCAGGAAGTGGCGGAGCTTGTCCACCAGCAGGAGCCTGCTGTGGAGCAGATCAACCAGGAT GCAGACAATGTTGCGCAGAACGTTTCGAACGCGAACAACCAGATCACGGAAGCTATCGCCAGCGCTCGTCGGGCG AGAAAGTGGAAGTGGTATGCTCTGCTTGTCGTCATCCTCATCATCGCCATCGTCGTCGGTGTTGCTGTCGGTGTC ACGGAAGCCAACAAGTCCTCGAAATAG |
| Transcript | >Ani_SJS100_1|g3971.t1 ATGAGTTACGGTGGAAACCAGGGTGGCTACGGCCAGTATAACCCCTATGGCCAGCAAGATGCCAACCCCTACAGC GACTCCAATGCCATGGAGCAGGGCAACGGTAGCTACGAAATGGGCTCCTACAACCAGCCTGCCGACGCGACGACG CTGCTGAACAAGTGCAGAGAGATCAACGACGGTATTGCGGATCTCCGCGCCAAGCGCGAGGGCCAGCTTGCGGCC GCCCAGAACGCCTTGCTCGATTCGAGTACCGGAAAGGAGGACCAGGTCGCTCGCCAGACTCTGGACTACATCGAG GATGAAGTGAACAACGGATTCCGTTACCTCCGCGATCTTCTGAAGAAGGTCAAGCAGACCCCCGGCTCCGGAGAC AGCCGTGTGCAGACCCAGATCGACGTCACTAGCCGGAACCTCCGTCGAGAGATCGAACAGTACCAGAGATGCCAG TCCGACTTCCAGAAGCGCCTGCGGGAGCAGGTTCGCAGACGTTATGAGATCGCCAACCCCGAAGCTTCCCCCGAG GAGATCGAGCAGGGTGTTGACAATGTCTTGTTGGGCCAGGAGCAGAGCTTCCAGGTTACTGGTAGCCGGACTAGA CAGGCCAACGACGCTAGGCAGGCCGCTTTGGAGCGATCGGCCGCCATTCGCAAGATCGAGCAGGATATGATGGAG CTTGGCCGCCTGTACCAGGAAGTGGCGGAGCTTGTCCACCAGCAGGAGCCTGCTGTGGAGCAGATCAACCAGGAT GCAGACAATGTTGCGCAGAACGTTTCGAACGCGAACAACCAGATCACGGAAGCTATCGCCAGCGCTCGTCGGGCG AGAAAGTGGAAGTGGTATGCTCTGCTTGTCGTCATCCTCATCATCGCCATCGTCGTCGGTGTTGCTGTCGGTGTC ACGGAAGCCAACAAGTCCTCGAAATAG |
| Gene | >Ani_SJS100_1|g3971.t1 ATGAGTGTATGTCGACACCCAGAACGTCATTATCCTGACCCTCTCCGCTACCCCACCCCTTATTATTCACCACCT GCGCATCGTCAAATAGCCTGCTAACTCGCCGATTTTCTAGTACGGTGGAAACCAGGGTGGCTACGGCCAGTATAA CCCCTATGGCCAGCAAGATGCCAACCCCTACAGCGACTCCAATGCCATGGAGCAGGGCAACGGTAGCTACGGTAG GCGCACCATATCCAGTACCCTTCCCAGCCTGACCCGACGATTGCCTAACATGCGTTTGCATATCAGAAATGGGCT CCTACAACCAGCCTGCCGACGCGACGACGCTGCTGAACAAGTGCAGAGAGATCAACGACGGTATTGCGGATCTCC GCGCCAAGCGCGAGGGCCAGCTTGCGGCCGCCCAGAACGCCTTGCTCGATTCGAGTACCGGAAAGGAGGACCAGG TCGCTCGCCAGACTCTGGACTACATCGAGGATGAAGTGAACAACGGATTCCGTTACCTCCGCGATCTTCTGAAGA AGGTCAAGCAGACCCCCGGCTCCGGAGACAGCCGTGTGCAGACCCAGATCGACGTCACTAGCCGGAACCTCCGTC GAGAGATCGAACAGTACCAGAGATGCCAGTCCGACTTCCAGAAGCGCCTGCGGGAGCAGGTTCGCAGACGTTATG AGATCGCCAACCCCGAAGCTTCCCCCGAGGAGATCGAGCAGGGTGTTGACAATGTCTTGTTGGGCCAGGAGCAGA GCTTCCAGGTATGCTCTTTCGAGAGATTTCAGAAAGTCCATGCTAACGTTTCGGTTAGGTTACTGGTAGCCGGAC TAGACAGGCCAACGACGCTAGGCAGGCCGCTTTGGAGCGATCGGCCGCCATTCGCAAGATCGAGCAGGATATGAT GGAGCTTGGCCGCCTGTACCAGGAAGTGGCGGAGCTTGTCCACCAGCAGGAGCCTGCTGTGGAGCAGATCAACCA GGATGCAGACAATGTTGCGCAGAACGTTTCGAACGCGAACAACCAGATCACGGAAGCTATCGCCAGCGCTCGTCG GGCGAGAAAGTGGAAGTGGTATGCTCTGCTTGTCGTCAGTAAGTGTCCCCGATGTGAGCACCCACTTAATAGGCC AGGCTGACAATTATCTTTAGTCCTCATCATCGCCATCGTCGTCGGTGTTGCTGTCGGTGTCACGGAAGCCAACAA GTCCTCGAAATAG |