Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g3962.t1
Gene name
Location	scaffold_019:73223..74079
Strand	+
Gene length (bp)	856
Transcript length (bp)	522
Coding sequence length (bp)	522
Protein length (aa)	174

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04117	Mpv17_PMP22	Mpv17 / PMP22 family	6.8E-21	110	166

GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0005575	cellular_component	No
GO:0110165	cellular anatomical entity	No
GO:0031224	intrinsic component of membrane	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 33	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	13	32	19
2	52	71	19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g3962.t1 MLRWYQARLAKQPILTASVTSALLFGSGDVLAQQLVDRKGFDKHDLARTGRMALYGGAIFGPAATTWYGVLQRHV VLNNAKTTLIARVIADQCVFTPAHLTCFLSSMAIMEGTDPIEKWRNGFVPSFKANLAIWPLVQGVNFAIVPLEYR VLFVNLVALGWNCLLSLINSGEK*
Coding	>Ani_SJS100_1\|g3962.t1 ATGCTCCGGTGGTATCAAGCGAGGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGTGACGAGTGCTCTGTTGTTT GGTAGTGGAGATGTTCTAGCCCAACAACTAGTCGATCGTAAGGGATTTGATAAGCACGACCTGGCAAGAACGGGA CGCATGGCCCTTTATGGTGGAGCGATCTTCGGGCCGGCTGCTACCACCTGGTACGGTGTTCTCCAGCGTCACGTC GTCCTGAATAACGCCAAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATGTGTCTTCACTCCCGCACACCTT ACTTGTTTCTTGTCCTCCATGGCTATCATGGAAGGCACCGATCCGATCGAGAAGTGGCGCAATGGTTTCGTTCCC AGCTTCAAAGCAAACCTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGC GTGCTTTTTGTCAACCTAGTCGCTTTGGGCTGGAACTGTTTGTTGAGCTTGATTAACAGCGGTGAGAAGTGA
Transcript	>Ani_SJS100_1\|g3962.t1 ATGCTCCGGTGGTATCAAGCGAGGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGTGACGAGTGCTCTGTTGTTT GGTAGTGGAGATGTTCTAGCCCAACAACTAGTCGATCGTAAGGGATTTGATAAGCACGACCTGGCAAGAACGGGA CGCATGGCCCTTTATGGTGGAGCGATCTTCGGGCCGGCTGCTACCACCTGGTACGGTGTTCTCCAGCGTCACGTC GTCCTGAATAACGCCAAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATGTGTCTTCACTCCCGCACACCTT ACTTGTTTCTTGTCCTCCATGGCTATCATGGAAGGCACCGATCCGATCGAGAAGTGGCGCAATGGTTTCGTTCCC AGCTTCAAAGCAAACCTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGC GTGCTTTTTGTCAACCTAGTCGCTTTGGGCTGGAACTGTTTGTTGAGCTTGATTAACAGCGGTGAGAAGTGA
Gene	>Ani_SJS100_1\|g3962.t1 ATGCTCCGGTGGTATGTCCCTATCCATCCTGATGATCAATATTTCCATCGCTGATCAGGCACAGGTATCAAGCGA GGTTGGCCAAGCAGCCTATCCTCACTGCTAGTGTGACGAGTGCTGTAAGAACTCCATTCTTCTTTCTTACAAATC AAGATTCATTTCCTCTCGTACTCTCTATTATCTAATGTCAACCCCGACGTAATACCAATTTGAGCTGACCTTTAT TTCCCATGCGGACTAGCTGTTGTTTGGTAGTGGAGATGTTCTAGCCCAACAACTAGTCGATCGTAAGGGATTTGA TAAGCACGACCTGGCAAGAACGGGACGCATGGCCCTTTATGGTGGAGGTGAGCTACCATATAATCCCTTGTCAAT CTGGGATCTTCTTTCTGCCCTTGGAAGTCCTGGGAAAGCCTTCCTCCATACAATGGGAAGTGGTCAAGCTAACAT ATAACAGCGATCTTCGGGCCGGCTGCTACCACCTGGTACGGTGTTCTCCAGCGTCACGTCGTCCTGAATAACGCC AAAACTACCCTCATTGCCCGTGTCATCGCGGATCAATGTGTCTTCACTCCCGCACACCTTACTTGTTTCTTGTCC TCCATGGCTATCATGGAAGGCACCGATCCGATCGAGAAGTGGCGCAATGGTTTCGTTCCCAGCTTCAAAGCAAAC CTTGCGATTTGGCCTCTCGTTCAAGGAGTCAACTTTGCCATCGTGCCACTTGAGTACCGCGTGCTTTTTGTCAAC CTAGTCGCTTTGGGTGTGTATTCCGGCCTTCTACTAATATCGAATGATGCTGACGCCATTAGGCTGGAACTGTTT GTTGAGCTTGATTAACAGCGGTGAGAAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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