© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g3955.t1 |
| Gene name | |
| Location | scaffold_019:47588..48741 |
| Strand | + |
| Gene length (bp) | 1153 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01036 | Bac_rhodopsin | Bacteriorhodopsin-like protein | 1.4E-26 | 47 | 270 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 69 | 22 |
| 2 | 76 | 95 | 19 |
| 3 | 126 | 148 | 22 |
| 4 | 155 | 177 | 22 |
| 5 | 182 | 204 | 22 |
| 6 | 217 | 239 | 22 |
| 7 | 249 | 271 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3955.t1 MIESFIKATPTLPWPEPSPTSSVAPIPTVVPGSDPIFQVLHDTGKRTLWVVTVLMGISSLVFYVLGARVPITKRV FHVLVALASTISFIIYLALATGQGMDWKLDIIKEHNKHVPNTTQEYYRQILWLRYVLWFLTEPLGLISLSLLSGL PGAHLLIAIAADFIMLGSGILGTYAGHSSRRWVWFTISAIGYLTTVYHISVHGSRAASNKDVQTKRFFGTLSGVM LFVKLLYPVALAAGALALKINVDVETILFAIYDIFSQGILGYWLLIAHDGAPGITLNVDGFWSHGLGNEGAIRIS EEDGA* |
| Coding | >Ani_SJS100_1|g3955.t1 ATGATCGAGTCCTTCATCAAGGCGACTCCAACTCTCCCTTGGCCTGAGCCATCGCCCACCTCGTCGGTGGCGCCC ATTCCCACTGTCGTTCCCGGCAGTGATCCCATCTTCCAGGTGCTCCATGACACCGGGAAACGGACACTATGGGTG GTTACTGTGCTCATGGGTATCTCCTCTCTCGTGTTCTACGTTCTAGGTGCTCGGGTCCCTATCACTAAACGCGTG TTCCACGTTCTCGTTGCTCTCGCCAGCACCATCTCCTTTATCATCTACCTCGCTCTGGCGACAGGACAAGGCATG GACTGGAAGCTCGACATCATCAAGGAGCACAACAAGCATGTCCCCAACACCACGCAGGAATACTACCGTCAAATC CTCTGGCTCCGCTATGTCCTTTGGTTCTTGACGGAGCCTTTGGGTCTCATCAGCTTGTCGCTGCTCTCCGGTCTG CCTGGCGCCCACCTACTCATCGCCATCGCGGCCGACTTTATCATGCTGGGCTCGGGCATTCTGGGCACCTATGCC GGCCATTCCTCGCGCAGATGGGTCTGGTTCACTATTAGCGCAATCGGATATCTTACAACAGTCTACCATATCAGT GTCCATGGAAGCCGGGCAGCGAGCAACAAGGATGTCCAGACCAAGCGGTTCTTCGGAACTCTGTCGGGCGTCATG TTGTTTGTCAAGCTCTTGTACCCAGTGGCCCTCGCTGCTGGAGCTTTGGCGCTGAAAATCAACGTTGATGTCGAG ACCATCCTCTTTGCCATCTACGATATCTTCTCCCAGGGTATTCTCGGTTATTGGCTGCTCATTGCGCATGACGGC GCTCCTGGAATTACCCTCAACGTTGACGGATTTTGGTCCCACGGCCTGGGTAACGAGGGCGCTATTCGCATCAGC GAAGAAGACGGAGCATAA |
| Transcript | >Ani_SJS100_1|g3955.t1 ATGATCGAGTCCTTCATCAAGGCGACTCCAACTCTCCCTTGGCCTGAGCCATCGCCCACCTCGTCGGTGGCGCCC ATTCCCACTGTCGTTCCCGGCAGTGATCCCATCTTCCAGGTGCTCCATGACACCGGGAAACGGACACTATGGGTG GTTACTGTGCTCATGGGTATCTCCTCTCTCGTGTTCTACGTTCTAGGTGCTCGGGTCCCTATCACTAAACGCGTG TTCCACGTTCTCGTTGCTCTCGCCAGCACCATCTCCTTTATCATCTACCTCGCTCTGGCGACAGGACAAGGCATG GACTGGAAGCTCGACATCATCAAGGAGCACAACAAGCATGTCCCCAACACCACGCAGGAATACTACCGTCAAATC CTCTGGCTCCGCTATGTCCTTTGGTTCTTGACGGAGCCTTTGGGTCTCATCAGCTTGTCGCTGCTCTCCGGTCTG CCTGGCGCCCACCTACTCATCGCCATCGCGGCCGACTTTATCATGCTGGGCTCGGGCATTCTGGGCACCTATGCC GGCCATTCCTCGCGCAGATGGGTCTGGTTCACTATTAGCGCAATCGGATATCTTACAACAGTCTACCATATCAGT GTCCATGGAAGCCGGGCAGCGAGCAACAAGGATGTCCAGACCAAGCGGTTCTTCGGAACTCTGTCGGGCGTCATG TTGTTTGTCAAGCTCTTGTACCCAGTGGCCCTCGCTGCTGGAGCTTTGGCGCTGAAAATCAACGTTGATGTCGAG ACCATCCTCTTTGCCATCTACGATATCTTCTCCCAGGGTATTCTCGGTTATTGGCTGCTCATTGCGCATGACGGC GCTCCTGGAATTACCCTCAACGTTGACGGATTTTGGTCCCACGGCCTGGGTAACGAGGGCGCTATTCGCATCAGC GAAGAAGACGGAGCATAA |
| Gene | >Ani_SJS100_1|g3955.t1 ATGATCGAGTCCTTCATCAAGGCGACTCCAACTCTCCCTTGGCCTGAGCCATCGCCCACCTCGTCGGTGGCGCCC ATTCCCACTGTCGTTCCCGGCAGTGATCCCATCTTCCAGGTGCTCCATGACACCGGGAAACGGACACTATGGTAA GACTGTTGCTGACGGAAATACGGAAATGTGACGAGTATAGCTAATGTCGAGTTACACAGGGTGGTTACTGTGCTC ATGGGTATCTCCTCTCTCGTGTTCTACGTTCTAGGTGCTCGGGTCCCTATCGTAAGTTCTCAGCAGCTACCACTG AATCTTGGGAACGGTAACTAACTATACTCTTGACTAGACTAAACGCGTGTTCCACGTTCTCGTTGCTCTCGCCAG CACCATCTCCTTTATCATCTACCTCGCTCTGGCGACAGGACAAGGCATGGACTGGAAGCTCGACATCATCAAGGA GCACAACAAGCATGTCCCCAACACCACGCAGGAATACTACCGTCAAATCCTCTGGCTCCGCTATGTCCTTTGGTT CTTGACGGAGCCTTTGGGTCTCATCAGCTTGTCGCTGCTCTCCGGTCTGCCTGGCGCCCACCTACTCATCGCCAT CGCGGCCGACTTTATCATGCTGGGCTCGGGCATTCTGGGCACCTATGCCGGCCATTCCTCGCGCAGATGGGTCTG GTTCACTATTAGCGCAATCGGATATCTTACAACAGTCTACCATATCAGTGTCCATGGAAGCCGGGCAGCGAGCAA CAAGGATGTCCAGACCAAGCGGTTCTTCGGAACTCTGTCGGGCGTCATGTTGTTTGTCAAGCTCTTGTACCCAGT GTATGTTCCTTTGGCCCAAGAGGATCTGTTGAACAATGTACTAACATGGAATAGGGCCCTCGCTGCTGGAGCTTT GGCGCTGAAAATCAACGTTGATGTCGAGACCATCCTCTTTGCCATCTACGATATCTTCTCCCAGGGTATTCTCGG TTATTGGCTGCTCATTGCGCATGACGGCGCTCCTGGAATGTATGTACCAACCGCTCATTGGTTTGGAACCTAGCG TCAAACTAACCATCTCATCAGTACCCTCAACGTTGACGGATTTTGGTCCCACGGCCTGGGTAACGAGGGCGCTAT TCGCATCAGCGAAGAAGACGGAGCATAA |