Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g3946.t1
Gene name
Locationscaffold_019:27499..28077
Strand-
Gene length (bp)578
Transcript length (bp)432
Coding sequence length (bp)432
Protein length (aa) 144

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02755 RPEL RPEL repeat 1.1E-08 24 47
PF02755 RPEL RPEL repeat 8.9E-11 69 90
PF02755 RPEL RPEL repeat 3.4E-08 113 135

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g3946.t1
MDPNTTAAAIDETPLSASPERRSSLEKHLQRRPDVQDLKDRHILLDTNVAPSLQATRQELARQRTTDALKKHLEH
RPEREELVERNILPTTHAAPALQANARELEKHMLADHLDQKIQNRPNPEDLISQGILTEDEDPRFPTV*
Coding >Ani_SJS100_1|g3946.t1
ATGGACCCCAACACTACTGCTGCCGCCATCGACGAGACCCCTCTCTCCGCATCTCCAGAACGTCGCAGTTCCTTG
GAGAAGCATCTCCAGAGACGCCCCGACGTGCAGGATCTCAAAGATAGACATATTCTGTTGGATACGAATGTTGCA
CCATCCCTCCAAGCAACCCGCCAAGAACTTGCCCGCCAACGCACCACAGACGCCCTGAAGAAACATCTCGAACAT
CGTCCTGAGCGGGAGGAGCTGGTTGAGCGGAACATCCTCCCAACCACCCACGCCGCCCCCGCACTGCAGGCCAAC
GCCCGCGAACTCGAGAAACATATGTTGGCTGATCACCTCGACCAGAAGATTCAGAATCGGCCTAATCCGGAGGAT
TTGATCTCGCAGGGCATTTTGACGGAGGATGAGGACCCGAGGTTTCCAACTGTTTAG
Transcript >Ani_SJS100_1|g3946.t1
ATGGACCCCAACACTACTGCTGCCGCCATCGACGAGACCCCTCTCTCCGCATCTCCAGAACGTCGCAGTTCCTTG
GAGAAGCATCTCCAGAGACGCCCCGACGTGCAGGATCTCAAAGATAGACATATTCTGTTGGATACGAATGTTGCA
CCATCCCTCCAAGCAACCCGCCAAGAACTTGCCCGCCAACGCACCACAGACGCCCTGAAGAAACATCTCGAACAT
CGTCCTGAGCGGGAGGAGCTGGTTGAGCGGAACATCCTCCCAACCACCCACGCCGCCCCCGCACTGCAGGCCAAC
GCCCGCGAACTCGAGAAACATATGTTGGCTGATCACCTCGACCAGAAGATTCAGAATCGGCCTAATCCGGAGGAT
TTGATCTCGCAGGGCATTTTGACGGAGGATGAGGACCCGAGGTTTCCAACTGTTTAG
Gene >Ani_SJS100_1|g3946.t1
ATGGACCCCAACACTACTGCTGCCGCCATCGACGAGACCCCTCTCTCCGCATCTCCAGAACGTCGCAGTTCCTTG
GAGAAGCATCTCCAGAGACGCCCCGACGTGCAGGATCTCAAAGATAGACATATTCTGTTGGATACGAATGTTGCA
CCGTACGGTTCCTCCTTCCATCTACACATCATCATCCTTATATTGTATATCTATTGGAGTACCTGACAAACAAGT
ACTAGATCCCTCCAAGCAACCCGCCAAGAACTTGCCCGCCAACGCACCACAGACGCCCTGAAGAAACATCTCGAA
CATCGTCCTGAGCGGGAGGAGCTGGTTGAGCGTATGCATATACCATATATATTTATCTCTCAGAATAAGTATATG
GCTGACTGATGATGGCAATCATAGGGAACATCCTCCCAACCACCCACGCCGCCCCCGCACTGCAGGCCAACGCCC
GCGAACTCGAGAAACATATGTTGGCTGATCACCTCGACCAGAAGATTCAGAATCGGCCTAATCCGGAGGATTTGA
TCTCGCAGGGCATTTTGACGGAGGATGAGGACCCGAGGTTTCCAACTGTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail