© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g3892.t1 |
| Gene name | |
| Location | scaffold_018:316185..317308 |
| Strand | - |
| Gene length (bp) | 1123 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 1.4E-15 | 207 | 326 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 97 | 119 | 22 |
| 3 | 134 | 151 | 17 |
| 4 | 171 | 193 | 22 |
| 5 | 208 | 230 | 22 |
| 6 | 251 | 273 | 22 |
| 7 | 283 | 300 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3892.t1 MELPFSLVDTALSSTHIDAIDALRAFFLLASCTILSVSILPDSLHSRFIPYGARTTSTADSQSSQSSPPASSDSS PAARALDYAAALTVPHSYFTQFYIASVLASVFWAAQLLCQGAVFQAFATRISPEHMQQSMSIHQVFLCWALMLIQ GARRLYECKAFAKPSASRMWFVHWLVGLAFYLAVSVALWIEGAGALLSHKVILDDLKVTIAPSLRTFVCIPLFLI ASGIQHDCHHYLFSLKKYTLPTHPIFRRIVCPHYTAECVIYLSLALLGAPKGEVVNKSLLSALVFVVINLGVTAA NTRHWYMRKFGEESVRERSNMIPWVY* |
| Coding | >Ani_SJS100_1|g3892.t1 ATGGAGCTCCCCTTCAGCCTGGTGGATACAGCTCTTTCCTCCACGCACATTGACGCCATCGACGCCCTTCGAGCC TTTTTCCTTTTGGCATCCTGCACGATACTCTCCGTCAGCATCCTGCCAGATTCGCTTCATTCACGCTTCATTCCT TATGGCGCTCGTACAACTTCGACGGCCGACTCGCAGTCCTCGCAGTCCTCGCCCCCGGCGTCCTCGGACTCCTCC CCAGCCGCCCGCGCTCTTGACTACGCTGCCGCCTTGACAGTCCCTCACAGCTACTTCACGCAATTCTACATTGCC TCCGTTTTGGCCTCGGTCTTCTGGGCTGCGCAGCTTCTGTGTCAAGGAGCCGTGTTCCAGGCCTTTGCAACGAGA ATCAGTCCGGAACATATGCAACAGTCCATGTCCATACACCAAGTCTTCTTGTGCTGGGCGCTCATGCTCATTCAG GGTGCAAGGCGGCTATATGAGTGCAAGGCCTTCGCCAAGCCTTCAGCCTCAAGAATGTGGTTTGTTCACTGGCTC GTAGGCCTTGCATTTTACCTAGCAGTATCCGTTGCCTTATGGATCGAAGGAGCAGGAGCCCTGCTGTCTCATAAA GTGATTCTCGACGACCTCAAGGTTACAATAGCACCCTCTCTCCGCACCTTTGTCTGCATTCCTCTTTTCTTGATT GCATCAGGCATCCAACACGACTGCCACCATTACCTCTTCTCTTTGAAGAAATATACCCTGCCCACTCACCCCATC TTTCGCAGGATCGTATGTCCACATTATACGGCAGAGTGTGTGATATATCTTTCGTTGGCTCTGCTGGGCGCGCCC AAGGGCGAGGTCGTAAACAAGTCGTTGTTGTCCGCTCTCGTATTTGTTGTTATCAACTTGGGCGTCACCGCTGCG AACACTAGGCATTGGTATATGCGAAAATTCGGCGAGGAGTCTGTGCGGGAAAGATCGAACATGATCCCTTGGGTT TACTAA |
| Transcript | >Ani_SJS100_1|g3892.t1 ATGGAGCTCCCCTTCAGCCTGGTGGATACAGCTCTTTCCTCCACGCACATTGACGCCATCGACGCCCTTCGAGCC TTTTTCCTTTTGGCATCCTGCACGATACTCTCCGTCAGCATCCTGCCAGATTCGCTTCATTCACGCTTCATTCCT TATGGCGCTCGTACAACTTCGACGGCCGACTCGCAGTCCTCGCAGTCCTCGCCCCCGGCGTCCTCGGACTCCTCC CCAGCCGCCCGCGCTCTTGACTACGCTGCCGCCTTGACAGTCCCTCACAGCTACTTCACGCAATTCTACATTGCC TCCGTTTTGGCCTCGGTCTTCTGGGCTGCGCAGCTTCTGTGTCAAGGAGCCGTGTTCCAGGCCTTTGCAACGAGA ATCAGTCCGGAACATATGCAACAGTCCATGTCCATACACCAAGTCTTCTTGTGCTGGGCGCTCATGCTCATTCAG GGTGCAAGGCGGCTATATGAGTGCAAGGCCTTCGCCAAGCCTTCAGCCTCAAGAATGTGGTTTGTTCACTGGCTC GTAGGCCTTGCATTTTACCTAGCAGTATCCGTTGCCTTATGGATCGAAGGAGCAGGAGCCCTGCTGTCTCATAAA GTGATTCTCGACGACCTCAAGGTTACAATAGCACCCTCTCTCCGCACCTTTGTCTGCATTCCTCTTTTCTTGATT GCATCAGGCATCCAACACGACTGCCACCATTACCTCTTCTCTTTGAAGAAATATACCCTGCCCACTCACCCCATC TTTCGCAGGATCGTATGTCCACATTATACGGCAGAGTGTGTGATATATCTTTCGTTGGCTCTGCTGGGCGCGCCC AAGGGCGAGGTCGTAAACAAGTCGTTGTTGTCCGCTCTCGTATTTGTTGTTATCAACTTGGGCGTCACCGCTGCG AACACTAGGCATTGGTATATGCGAAAATTCGGCGAGGAGTCTGTGCGGGAAAGATCGAACATGATCCCTTGGGTT TACTAA |
| Gene | >Ani_SJS100_1|g3892.t1 ATGGAGCTCCCCTTCAGCCTGGTGGATACAGCTCTTTCCTCCACGCACATTGACGCCATCGACGCCCTTCGAGCC TTTTTCCTTTTGGCATCCTGCACGGTATGCACCGATATGTTGCCATCCCAAATTCGAGGCGGACGACGTTGCAAA GTGACCCTGCATCAACTAAACCCAGAATATCCCAACTAGATACTCTCCGTCAGCATCCTGCCAGATTCGCTTCAT TCACGCTTCATTCCTTATGGCGCTCGTACAACTTCGACGGCCGACTCGCAGTCCTCGCAGTCCTCGCCCCCGGCG TCCTCGGACTCCTCCCCAGCCGCCCGCGCTCTTGACTACGCTGCCGCCTTGACAGTCCCTCACAGCTACTTCACG CAATTCTACATTGCCTCCGTTTTGGCCTCGGTCTTCTGGGCTGCGCAGCTTCTGTGTCAAGGAGCCGTGTTCCAG GCCTTTGCAACGAGAATCAGTCCGGAACATATGCAACAGTCCATGTCCATACACCAAGTCTTCTTGTGCTGGGCG CTCATGCTCATTCAGGGTGCAAGGCGGCTATATGAGTGCAAGGCCTTCGCCAAGCCTTCAGCCTCAAGAATGTGG TTTGTTCACTGGCTCGTAGGCCTTGCATTTTACCTAGCAGTATCCGTTGCCTTATGGATCGAAGGAGCAGGTACC ACTCTGACTGACAGGCTAAAATACCGAACCCCACTGATTGCATCTAGGAGCCCTGCTGTCTCATAAAGTGATTCT CGACGACCTCAAGGTTACAATAGCACCCTCTCTCCGCACCTTTGTCTGCATTCCTCTTTTCTTGATTGCATCAGG CATCCAACACGACTGCCACCATTACCTCTTCTCTTTGAAGAAATATACCCTGCCCACTCACCCCATCTTTCGCAG GATCGTATGTCCACATTATACGGCAGAGTGTGTGATATATCTTTCGTTGGCTCTGCTGGGCGCGCCCAAGGGCGA GGTCGTAAACAAGTCGTTGTTGTCCGCTCTCGTATTTGTTGTTATCAACTTGGGCGTCACCGCTGCGAACACTAG GCATTGGTATATGCGAAAATTCGGCGAGGAGTCTGTGCGGGAAAGATCGAACATGATCCCTTGGGTTTACTAA |