Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g3861.t1
Gene name
Locationscaffold_018:232016..232406
Strand+
Gene length (bp)390
Transcript length (bp)315
Coding sequence length (bp)315
Protein length (aa) 105

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03647 Tmemb_14 Transmembrane proteins 14C 6.0E-19 9 96

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 7 24 17
2 28 47 19
3 54 76 22
4 81 103 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g3861.t1
MSTTTKTALLLTLLTSIGGITGYLRARSLPSLIAGLSVSFLYLLSYLRLRANQPYGAEIGLLASLVLGGASIPRA
IKTGKGVPMGLGVLAVVGAVVFGNAVVNN*
Coding >Ani_SJS100_1|g3861.t1
ATGTCCACAACCACCAAAACAGCCCTCCTCCTCACCCTCCTCACCTCCATCGGCGGCATAACCGGCTACCTGCGC
GCGCGCTCCCTCCCCTCCCTGATCGCCGGCCTCTCCGTCTCCTTCCTCTACCTCCTCTCGTATCTCCGTCTGCGC
GCGAACCAGCCCTACGGTGCAGAGATCGGTCTCTTGGCGTCCCTTGTCCTGGGTGGTGCGTCGATCCCCAGAGCC
ATTAAGACGGGGAAGGGTGTGCCCATGGGTCTGGGGGTTTTGGCGGTTGTCGGGGCTGTGGTTTTTGGGAATGCG
GTTGTTAATAATTAG
Transcript >Ani_SJS100_1|g3861.t1
ATGTCCACAACCACCAAAACAGCCCTCCTCCTCACCCTCCTCACCTCCATCGGCGGCATAACCGGCTACCTGCGC
GCGCGCTCCCTCCCCTCCCTGATCGCCGGCCTCTCCGTCTCCTTCCTCTACCTCCTCTCGTATCTCCGTCTGCGC
GCGAACCAGCCCTACGGTGCAGAGATCGGTCTCTTGGCGTCCCTTGTCCTGGGTGGTGCGTCGATCCCCAGAGCC
ATTAAGACGGGGAAGGGTGTGCCCATGGGTCTGGGGGTTTTGGCGGTTGTCGGGGCTGTGGTTTTTGGGAATGCG
GTTGTTAATAATTAG
Gene >Ani_SJS100_1|g3861.t1
ATGGTACATCCCTCCCTCTTCCCCAACTACATCCCACAACCCCACTCCCAAACTAACTCTAAGAAACATCATACA
TAGTCCACAACCACCAAAACAGCCCTCCTCCTCACCCTCCTCACCTCCATCGGCGGCATAACCGGCTACCTGCGC
GCGCGCTCCCTCCCCTCCCTGATCGCCGGCCTCTCCGTCTCCTTCCTCTACCTCCTCTCGTATCTCCGTCTGCGC
GCGAACCAGCCCTACGGTGCAGAGATCGGTCTCTTGGCGTCCCTTGTCCTGGGTGGTGCGTCGATCCCCAGAGCC
ATTAAGACGGGGAAGGGTGTGCCCATGGGTCTGGGGGTTTTGGCGGTTGTCGGGGCTGTGGTTTTTGGGAATGCG
GTTGTTAATAATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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