© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g3852.t1 |
| Gene name | |
| Location | scaffold_018:202384..205184 |
| Strand | + |
| Gene length (bp) | 2800 |
| Transcript length (bp) | 2745 |
| Coding sequence length (bp) | 2745 |
| Protein length (aa) | 915 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04408 | HA2 | Helicase associated domain (HA2) | 7.2E-19 | 582 | 667 |
| PF07717 | OB_NTP_bind | Oligonucleotide/oligosaccharide-binding (OB)-fold | 5.4E-16 | 726 | 803 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 2.7E-15 | 389 | 517 |
| PF00270 | DEAD | DEAD/DEAH box helicase | 2.1E-05 | 197 | 346 |
| PF09848 | DUF2075 | Schlafen group 3, DNA/RNA helicase domain | 2.6E-05 | 205 | 312 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0004386 | helicase activity | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0003674 | molecular_function | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3852.t1 MASNDQPPAKRLKSSNLPPQLRDAKRKDIDNWETNRMLTSGVAQRRDFDGDFMPEDEEGTRVHLLVHDLRPPFLD GRTIFTKQLEPISAVRDPQSDMAVFSRKGSKVVRERRQQRERQKQAQEATTMAGTALGNLMGVKEDEGDSAVAMP VEDAYKSGNKFAQHLKKDEGGQSSFSKSKTLREQREFLPAFAVREDLLRVIRDNQVVVVVGETGSGKTTQLTQFL HEDGYSKFGMIGCTQPRRVAAMSVAKRVSEEMEVDLGDEVGYAIRFEDCTGPKTVIKYMTDGVLLRESLVQQDLD KYSCIIMDEAHERALNTDVLMGLLKKVLARRRDLKLIVTSATMNAERFSRFYGGAPEFIIPGRTFPVDVHFSRTP CEDYVDSAVKQVLAIHVSQGPGDILVFMTGQEDIEATCELVDERLKLLNDPPKLSILPIYSQMPAEQQAKIFERA EPGVRKVIVATNIAETSLTVDGIMFVVDSGYSKLKVYNPKMGMDTLQITPISQANANQRSGRAGRTGPGKAYRLY TEVAYKNELYLQTIPEIQRTSLSNTVLLLKSLGVKDLLDFDFMDPPPQETITTSLFELWSLGALDNLGDLTPLGR RMTPFPMDPPLAKLIITAAETYGCSEEMLTIVSMLSVPSVFYRPRERQEESDAAREKFFVPESDHLTLLHVYTQW KANGYSDGWCTRHFLHAKALRRAREVRDQLHDIMTVQKMPLVSCGTDWDEIRKCICSGFYHQAARVKGIGEFLNL RTSVSMQLHPTSALYGLGYVPEYVVYHELILTSKEYMSTVTAVDPHWLAELGGVFYSVKEKGYSQRERRITEQEF NRRVEIETQMAADRERAAAEKQREAERNDPSRRRKEIEVGSVVRRPVATARRVGGVTASSSGGGARNGGSGGGSV VKKPQIKRKPGRAF* |
| Coding | >Ani_SJS100_1|g3852.t1 ATGGCTTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCTCCCGCCACAGCTGCGCGACGCAAAG CGCAAGGATATCGACAACTGGGAAACGAACCGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGC GACTTCATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCATGACCTCCGTCCGCCTTTCCTCGAT GGCCGCACGATCTTCACCAAGCAGCTCGAGCCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTC AGTCGGAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACGCCAGAAGCAAGCGCAGGAGGCGACA ACGATGGCAGGAACGGCGCTGGGAAACCTCATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCC GTGGAGGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAAGGATGAAGGTGGACAAAGTTCGTTC AGCAAGAGCAAGACGCTCCGGGAGCAGAGGGAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTC ATTCGAGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAAAACAACACAGCTGACGCAGTTCCTG CACGAGGACGGTTATTCGAAGTTTGGCATGATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCC AAGCGTGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTATGCTATTCGTTTCGAAGATTGCACA GGCCCGAAGACGGTCATCAAGTACATGACTGATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGAC AAGTATTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACACAGACGTGCTCATGGGTCTTCTCAAG AAGGTCCTAGCTCGACGCAGGGACTTGAAGCTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGA TTCTACGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGTCGATGTTCACTTCTCGCGCACACCA TGCGAGGACTATGTTGACAGCGCGGTCAAGCAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTT GTGTTTATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGATGAGCGATTAAAGCTGCTGAACGAC CCGCCAAAATTGAGCATTCTTCCCATCTACAGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCT GAGCCTGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAGTCTGACAGTTGACGGTATCATGTTC GTCGTGGATTCGGGGTACTCCAAACTTAAGGTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCA ATATCACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGGACCGGGCAAGGCATATCGTCTGTAT ACCGAAGTGGCGTATAAGAACGAGCTATACCTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACC GTCCTTCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTTTATGGACCCCCCACCCCAGGAGACA ATCACCACATCCCTCTTCGAGCTTTGGTCACTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGT CGAATGACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCGCAGAAACCTACGGCTGCAGC GAGGAAATGCTAACCATCGTATCTATGCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAA TCCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCACTTTACTCCACGTGTACACGCAATGG AAAGCAAACGGCTACTCCGACGGCTGGTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAA GTCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTTGCGGCACTGACTGGGACGAG ATCCGCAAATGCATCTGCTCGGGTTTCTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTC CGAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGATATGTCCCGGAGTACGTGGTC TACCACGAATTGATCCTCACCAGCAAGGAGTACATGTCTACCGTGACTGCTGTAGATCCACATTGGCTCGCCGAA CTCGGAGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCCGCATCACCGAACAAGAGTTC AACCGGCGCGTGGAGATCGAGACTCAGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCG GAGAGGAACGATCCATCCAGACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGCGGAGGCCTGTCGCGACAGCA AGACGTGTAGGGGGTGTGACGGCCTCGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTG GTTAAGAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTTTTGA |
| Transcript | >Ani_SJS100_1|g3852.t1 ATGGCTTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCTCCCGCCACAGCTGCGCGACGCAAAG CGCAAGGATATCGACAACTGGGAAACGAACCGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGC GACTTCATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCATGACCTCCGTCCGCCTTTCCTCGAT GGCCGCACGATCTTCACCAAGCAGCTCGAGCCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTC AGTCGGAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACGCCAGAAGCAAGCGCAGGAGGCGACA ACGATGGCAGGAACGGCGCTGGGAAACCTCATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCC GTGGAGGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAAGGATGAAGGTGGACAAAGTTCGTTC AGCAAGAGCAAGACGCTCCGGGAGCAGAGGGAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTC ATTCGAGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAAAACAACACAGCTGACGCAGTTCCTG CACGAGGACGGTTATTCGAAGTTTGGCATGATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCC AAGCGTGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTATGCTATTCGTTTCGAAGATTGCACA GGCCCGAAGACGGTCATCAAGTACATGACTGATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGAC AAGTATTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACACAGACGTGCTCATGGGTCTTCTCAAG AAGGTCCTAGCTCGACGCAGGGACTTGAAGCTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGA TTCTACGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGTCGATGTTCACTTCTCGCGCACACCA TGCGAGGACTATGTTGACAGCGCGGTCAAGCAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTT GTGTTTATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGATGAGCGATTAAAGCTGCTGAACGAC CCGCCAAAATTGAGCATTCTTCCCATCTACAGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCT GAGCCTGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAGTCTGACAGTTGACGGTATCATGTTC GTCGTGGATTCGGGGTACTCCAAACTTAAGGTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCA ATATCACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGGACCGGGCAAGGCATATCGTCTGTAT ACCGAAGTGGCGTATAAGAACGAGCTATACCTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACC GTCCTTCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTTTATGGACCCCCCACCCCAGGAGACA ATCACCACATCCCTCTTCGAGCTTTGGTCACTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGT CGAATGACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCGCAGAAACCTACGGCTGCAGC GAGGAAATGCTAACCATCGTATCTATGCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAA TCCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCACTTTACTCCACGTGTACACGCAATGG AAAGCAAACGGCTACTCCGACGGCTGGTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAA GTCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTTGCGGCACTGACTGGGACGAG ATCCGCAAATGCATCTGCTCGGGTTTCTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTC CGAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGATATGTCCCGGAGTACGTGGTC TACCACGAATTGATCCTCACCAGCAAGGAGTACATGTCTACCGTGACTGCTGTAGATCCACATTGGCTCGCCGAA CTCGGAGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCCGCATCACCGAACAAGAGTTC AACCGGCGCGTGGAGATCGAGACTCAGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCG GAGAGGAACGATCCATCCAGACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGCGGAGGCCTGTCGCGACAGCA AGACGTGTAGGGGGTGTGACGGCCTCGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTG GTTAAGAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTTTTGA |
| Gene | >Ani_SJS100_1|g3852.t1 ATGGCTTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCTCCCGCCACAGCTGCGCGACGCAAAG CGCAAGGATATCGACAACTGGGAAACGAACCGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGC GACTTCATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCATGACCTCCGTCCGCCTTTCCTCGAT GGCCGCACGATCTTCACCAAGCAGCTCGAGCCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTC AGTCGGAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACGCCAGAAGCAAGCGCAGGAGGCGACA ACGATGGCAGGAACGGCGCTGGGAAACCTCATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCC GTGGAGGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAAGGATGAAGGTGGACAAAGTTCGTTC AGCAAGAGCAAGACGCTCCGGGAGCAGAGGGAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTC ATTCGAGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAAAACAACACAGCTGACGCAGTTCCTG CACGAGGACGGTTATTCGAAGTTTGGCATGATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCC AAGCGTGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTATGCTATTCGTTTCGAAGATTGCACA GGCCCGAAGACGGTCATCAAGTACATGACTGATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGAC AAGTATTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACACAGACGTGCTCATGGGTCTTCTCAAG AAGGTCCTAGCTCGACGCAGGGACTTGAAGCTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGA TTCTACGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGTCGATGTTCACTTCTCGCGCACACCA TGCGAGGACTATGTTGACAGCGCGGTCAAGCAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTT GTGTTTATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGATGAGCGATTAAAGCTGCTGAACGAC CCGCCAAAATTGAGCATTCTTCCCATCTACAGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCT GAGCCTGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAGTCTGACAGTTGACGGTATCATGTTC GTCGTGGATTCGGGGTACTCCAAACTTAAGGTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCA ATATCACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGGACCGGGCAAGGCATATCGTCTGTAT ACCGAAGTGGCGTATAAGAACGAGCTATACCTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACC GTCCTTCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTTTATGGACCCCCCACCCCAGGAGACA ATCACCACATCCCTCTTCGAGCTTTGGTCACTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGT CGAATGACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCGCAGAAACCTACGGCTGCAGC GAGGAAATGCTAACCATCGTATCTATGCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAA TCCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCACTTTACTCCACGTGTACACGCAATGG AAAGCAAACGGCTACTCCGACGGCTGGTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAA GTCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTTGCGGCACTGACTGGGACGAG ATCCGCAAATGCATCTGCTCGGGTTTCTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTC CGAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGATATGTCCCGGAGTACGTGGTC TACCACGAATTGATCCTCACCAGCAAGGAGTACATGTCTACCGTGACTGCTGTAGATCCACATGTAAGGTCCCCA CCCTATCCCATATACAATAAATACTAACGACATCCGGTAATAGTGGCTCGCCGAACTCGGAGGTGTCTTCTACTC CGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCCGCATCACCGAACAAGAGTTCAACCGGCGCGTGGAGATCGA GACTCAGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCGGAGAGGAACGATCCATCCAG ACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGCGGAGGCCTGTCGCGACAGCAAGACGTGTAGGGGGTGTGAC GGCCTCGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTGGTTAAGAAGCCGCAGATTAA GCGGAAACCAGGACGGGCCTTTTGA |