© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g3834.t1 |
| Gene name | |
| Location | scaffold_018:137138..138906 |
| Strand | - |
| Gene length (bp) | 1768 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1656 |
| Protein length (aa) | 552 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00515 | TPR_1 | Tetratricopeptide repeat | 7.4E-07 | 90 | 120 |
| PF00515 | TPR_1 | Tetratricopeptide repeat | 9.0E-08 | 322 | 355 |
| PF07719 | TPR_2 | Tetratricopeptide repeat | 2.2E-05 | 89 | 120 |
| PF07719 | TPR_2 | Tetratricopeptide repeat | 2.1E-06 | 322 | 354 |
| PF00226 | DnaJ | DnaJ domain | 1.1E-27 | 410 | 472 |
| PF14559 | TPR_19 | Tetratricopeptide repeat | 5.2E-08 | 98 | 149 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 6.3E-04 | 59 | 120 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 3.9E-03 | 93 | 149 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 8.8E-06 | 290 | 354 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 3.9E-02 | 64 | 85 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.1E-01 | 92 | 120 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 8.5E-06 | 322 | 353 |
| PF13174 | TPR_6 | Tetratricopeptide repeat | 4.9E-02 | 239 | 270 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3834.t1 MAAARDDLRSSMDVDTNDPRLGSPSATNGVNGTHTEKSPTPPPHRSNGNTAEADSFKLAGNKFFKDGNYARAIEE FTKALEISPNSSVYLSNRAAAYMAANQYLAALEDCERACELDPTNTKIMYRLARILTSLGRPTEALDVLSRIEPP ASATDRAAAEKMLRFVSQAEEALSQDRGVSMVLFCLDQARQLLGQGVKEPRKWTLMTAEAQLKMGNDNSYGKAQD IAISMLRVNSQDPDALMIRARAFYGMGDTEQALKLLKMCLGLDPDMKAAIKLLRTVQKLVRTKEEGNTAFKAKDY RRAIDLWGEALTVDPKNKDQNAKILQNRAQAYINLKEYDSAVADCNEALRLDPGYLKAQKMRAKAHGGAGNWEEA VRDYKAVAESNPTEKGIQEEIRRAEFELKKAQRKDYYKILGVSKDAGEQEIKKAYRKMAIQYHPDKNRDGDAGDE KFKEIGEAYETLSDPQKRAAYDNGDDLMDPADMFSHGGFGGMGGMGGMGGMGGMGGMGGMGGMGGTHINIDPSVL FNMMNGGGGFAHAGGQRGGFPGGFPF* |
| Coding | >Ani_SJS100_1|g3834.t1 ATGGCTGCTGCTCGCGATGATCTCCGGAGCTCGATGGACGTTGACACCAACGATCCCCGCCTCGGCTCTCCCTCT GCCACCAACGGTGTGAATGGCACTCACACGGAGAAGAGTCCGACCCCGCCCCCTCACCGGTCCAATGGAAACACC GCCGAGGCCGACTCCTTCAAGCTGGCAGGAAACAAGTTTTTCAAGGATGGCAACTATGCCCGCGCCATTGAGGAA TTCACCAAGGCTCTCGAGATTAGCCCCAACTCGTCCGTCTACCTGTCCAACCGGGCTGCAGCATACATGGCGGCC AACCAATATCTCGCTGCTCTGGAGGACTGCGAACGGGCCTGCGAGCTCGACCCCACCAACACTAAGATCATGTAC CGGTTGGCCCGTATCCTGACCAGCTTGGGCCGTCCGACGGAGGCTCTTGACGTGCTGTCTCGTATCGAGCCCCCG GCCTCCGCTACTGACCGTGCGGCCGCAGAGAAGATGCTCCGCTTCGTCAGCCAGGCGGAGGAGGCTCTTTCGCAG GATCGTGGTGTCTCAATGGTGCTGTTCTGCCTCGACCAGGCCCGTCAGCTCCTCGGACAAGGCGTCAAGGAGCCC CGCAAGTGGACGCTGATGACTGCAGAGGCCCAGTTGAAGATGGGCAACGACAACTCGTACGGCAAGGCACAGGAC ATTGCTATCAGCATGCTCCGCGTGAACAGCCAGGACCCTGATGCGCTGATGATCCGCGCCCGGGCCTTCTACGGT ATGGGTGACACGGAGCAGGCGCTGAAGCTGCTGAAGATGTGTCTGGGTCTGGATCCCGATATGAAGGCGGCGATC AAGCTGCTGCGGACTGTGCAGAAGCTGGTACGCACCAAGGAAGAGGGTAACACGGCATTCAAGGCCAAGGACTAC CGTCGCGCCATCGACCTGTGGGGTGAGGCGCTGACGGTGGACCCGAAGAACAAGGACCAGAACGCCAAGATCCTG CAGAACCGGGCGCAGGCATACATCAACCTGAAGGAGTACGACAGCGCAGTGGCAGACTGCAACGAGGCCCTGCGG CTGGACCCCGGGTACCTCAAGGCGCAGAAGATGCGCGCCAAGGCGCATGGCGGTGCCGGAAACTGGGAAGAAGCT GTGCGCGACTACAAGGCGGTGGCGGAGTCGAACCCGACCGAGAAGGGCATCCAAGAGGAAATCCGTCGGGCCGAG TTTGAGCTGAAGAAGGCGCAGCGCAAGGATTACTACAAGATCCTCGGAGTGTCCAAGGACGCGGGCGAGCAAGAG ATCAAGAAGGCGTACCGCAAGATGGCGATCCAGTACCACCCGGACAAGAACCGGGACGGGGATGCGGGTGACGAG AAGTTCAAGGAGATTGGTGAGGCGTACGAGACTTTGAGTGATCCTCAGAAACGTGCTGCCTACGACAACGGCGAT GACCTGATGGACCCAGCTGACATGTTCTCGCACGGCGGCTTCGGCGGCATGGGAGGCATGGGAGGCATGGGCGGT ATGGGCGGTATGGGAGGAATGGGTGGTATGGGTGGTATGGGAGGAACCCATATCAACATCGACCCCAGCGTGCTG TTCAACATGATGAACGGCGGCGGCGGATTTGCGCACGCAGGAGGACAGCGCGGAGGATTCCCCGGCGGATTTCCC TTTTAG |
| Transcript | >Ani_SJS100_1|g3834.t1 ATGGCTGCTGCTCGCGATGATCTCCGGAGCTCGATGGACGTTGACACCAACGATCCCCGCCTCGGCTCTCCCTCT GCCACCAACGGTGTGAATGGCACTCACACGGAGAAGAGTCCGACCCCGCCCCCTCACCGGTCCAATGGAAACACC GCCGAGGCCGACTCCTTCAAGCTGGCAGGAAACAAGTTTTTCAAGGATGGCAACTATGCCCGCGCCATTGAGGAA TTCACCAAGGCTCTCGAGATTAGCCCCAACTCGTCCGTCTACCTGTCCAACCGGGCTGCAGCATACATGGCGGCC AACCAATATCTCGCTGCTCTGGAGGACTGCGAACGGGCCTGCGAGCTCGACCCCACCAACACTAAGATCATGTAC CGGTTGGCCCGTATCCTGACCAGCTTGGGCCGTCCGACGGAGGCTCTTGACGTGCTGTCTCGTATCGAGCCCCCG GCCTCCGCTACTGACCGTGCGGCCGCAGAGAAGATGCTCCGCTTCGTCAGCCAGGCGGAGGAGGCTCTTTCGCAG GATCGTGGTGTCTCAATGGTGCTGTTCTGCCTCGACCAGGCCCGTCAGCTCCTCGGACAAGGCGTCAAGGAGCCC CGCAAGTGGACGCTGATGACTGCAGAGGCCCAGTTGAAGATGGGCAACGACAACTCGTACGGCAAGGCACAGGAC ATTGCTATCAGCATGCTCCGCGTGAACAGCCAGGACCCTGATGCGCTGATGATCCGCGCCCGGGCCTTCTACGGT ATGGGTGACACGGAGCAGGCGCTGAAGCTGCTGAAGATGTGTCTGGGTCTGGATCCCGATATGAAGGCGGCGATC AAGCTGCTGCGGACTGTGCAGAAGCTGGTACGCACCAAGGAAGAGGGTAACACGGCATTCAAGGCCAAGGACTAC CGTCGCGCCATCGACCTGTGGGGTGAGGCGCTGACGGTGGACCCGAAGAACAAGGACCAGAACGCCAAGATCCTG CAGAACCGGGCGCAGGCATACATCAACCTGAAGGAGTACGACAGCGCAGTGGCAGACTGCAACGAGGCCCTGCGG CTGGACCCCGGGTACCTCAAGGCGCAGAAGATGCGCGCCAAGGCGCATGGCGGTGCCGGAAACTGGGAAGAAGCT GTGCGCGACTACAAGGCGGTGGCGGAGTCGAACCCGACCGAGAAGGGCATCCAAGAGGAAATCCGTCGGGCCGAG TTTGAGCTGAAGAAGGCGCAGCGCAAGGATTACTACAAGATCCTCGGAGTGTCCAAGGACGCGGGCGAGCAAGAG ATCAAGAAGGCGTACCGCAAGATGGCGATCCAGTACCACCCGGACAAGAACCGGGACGGGGATGCGGGTGACGAG AAGTTCAAGGAGATTGGTGAGGCGTACGAGACTTTGAGTGATCCTCAGAAACGTGCTGCCTACGACAACGGCGAT GACCTGATGGACCCAGCTGACATGTTCTCGCACGGCGGCTTCGGCGGCATGGGAGGCATGGGAGGCATGGGCGGT ATGGGCGGTATGGGAGGAATGGGTGGTATGGGTGGTATGGGAGGAACCCATATCAACATCGACCCCAGCGTGCTG TTCAACATGATGAACGGCGGCGGCGGATTTGCGCACGCAGGAGGACAGCGCGGAGGATTCCCCGGCGGATTTCCC TTTTAG |
| Gene | >Ani_SJS100_1|g3834.t1 ATGGCTGCTGCTCGCGATGATCTCCGGAGCTCGATGGACGTTGACACCAACGATCCCCGCCTCGGCTCTCCCTCT GCCACCAACGGTGTGAATGGCACTCACACGGAGAAGAGTCCGACCCCGCCCCCTCACCGGTCCAATGGAAACACC GCCGAGGCCGACTCCTTCAAGCTGGCAGGAAACAAGTTTTTCAAGGATGGCAACTATGCCCGCGCCATTGAGGAA TTCACCAAGGGTAGGTTTAATACCTGATTCTGCCGGACAATCTTCTGCAGTGTTAGTAACAATGGTACAGCTCTC GAGATTAGCCCCAACTCGTCCGTCTACCTGTCCAACCGGGCTGCAGCATACATGGCGGCCAACCAATATCTCGCT GCTCTGGAGGACTGCGAACGGGCCTGCGAGCTCGACCCCACCAACACTAAGATCATGTACCGGTTGGCCCGTATC CTGACCAGCTTGGGCCGTCCGACGGAGGCTCTTGACGTGCTGTCTCGTATCGAGCCCCCGGCCTCCGCTACTGAC CGTGCGGCCGCAGAGAAGATGCTCCGCTTCGTCAGCCAGGCGGAGGAGGCTCTTTCGCAGGATCGTGGTGTCTCA ATGGTGCTGTTCTGCCTCGACCAGGCCCGTCAGCTCCTCGGACAAGGCGTCAAGGAGCCCCGCAAGTGGACGCTG ATGACTGCAGAGGCCCAGTTGAAGATGGGCAACGACAACTCGTACGGCAAGGCACAGGACATTGCTATCAGCATG CTCCGCGTGAACAGCCAGGACCCTGATGCGCTGATGATCCGCGCCCGGGCCTTCTACGGTATGGGTGACACGGAG CAGGCGCTGAAGCTGCTGAAGATGTGTCTGGGTCTGGATCCCGATATGAAGGCGGCGATCAAGCTGCTGCGGACT GTGCAGAAGCTGGTACGCACCAAGGAAGAGGGTAACACGGCATTCAAGGCCAAGGACTACCGTCGCGCCATCGAC CTGTGGGGTGAGGCGCTGACGGTGGACCCGAAGAACAAGGACCAGAACGCCAAGATCCTGCAGAACCGGGCGCAG GCATACATCAACCTGAAGGAGTACGACAGCGCAGTGGCAGACTGCAACGAGGCCCTGCGGCTGGACCCCGGGTAC CTCAAGGCGCAGAAGATGCGCGCCAAGGCGCATGGCGGTGCCGGAAACTGGGAAGAAGCTGTGCGCGACTACAAG GCGGTGGCGGAGTCGAACCCGACCGAGAAGGGCATCCAAGAGGAAATCCGTCGGGCCGAGTTTGAGCTGAAGAAG GCGCAGCGCAAGGATTACTACAAGATCCTCGGAGTGTCCAAGGACGCGGGCGAGCAAGAGATCAAGAAGGCGTAC CGCAAGATGGCGATCCAGTACCACCCGGACAAGAACCGGGACGGGGATGCGGGTGACGAGAAGTTCAAGGAGATT GGTGAGGCGTACGAGACTTTGAGTGATCCTCAGTAAGTTCATCCTTTGATGTGGTGATGAGTGGCTTTCGCTAAC CAAGCATAGGAAACGTGCTGCCTACGACAACGGCGATGACCTGATGGACCCAGCTGACATGTTCTCGCACGGCGG CTTCGGCGGCATGGGAGGCATGGGAGGCATGGGCGGTATGGGCGGTATGGGAGGAATGGGTGGTATGGGTGGTAT GGGAGGAACCCATATCAACATCGACCCCAGCGTGCTGTTCAACATGATGAACGGCGGCGGCGGATTTGCGCACGC AGGAGGACAGCGCGGAGGATTCCCCGGCGGATTTCCCTTTTAG |