© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g3823.t1 |
| Gene name | |
| Location | scaffold_018:101739..103018 |
| Strand | - |
| Gene length (bp) | 1279 |
| Transcript length (bp) | 1119 |
| Coding sequence length (bp) | 1119 |
| Protein length (aa) | 373 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01758 | SBF | Sodium Bile acid symporter family | 1.8E-49 | 78 | 273 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 56 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 39 | 58 | 19 |
| 2 | 68 | 90 | 22 |
| 3 | 110 | 132 | 22 |
| 4 | 142 | 164 | 22 |
| 5 | 171 | 193 | 22 |
| 6 | 213 | 235 | 22 |
| 7 | 244 | 266 | 22 |
| 8 | 276 | 298 | 22 |
| 9 | 318 | 335 | 17 |
| 10 | 339 | 361 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3823.t1 MAHEEKDHPDVEACSESQHDDSEQGPTSAFQQLAILDRFLAVWIFLAMAVGIILGNFVPNTSKALERGKFVGVSV PIAIGLLVMMYPILCKVRFETLHRSFREKGLWVQVGFSIVVNWIIAPFFMLGLAWAFLPDERGLREGLILVGIAR CIAMVLVWTGLAGGDGEYCAILVAINSILQMVLFAPLATFFIRVIGGANHGLTIDYSLAAKSVGVFLGIPLGAAI VTRLCLRFLISREWYDKHFLKWISPLSLIGLLFTILVLFASQGQHVVHQIVSVIRVAAPLVVYFAVIFGVTLAVT RRCGFGYRLSCTQSFTAASNNFELAIAVAIATFGVDSDQALAATVGPLIEVPVLLGLVYVVKWVARRQKWTP* |
| Coding | >Ani_SJS100_1|g3823.t1 ATGGCGCACGAAGAGAAGGACCACCCCGATGTAGAGGCGTGCAGTGAGAGTCAACATGATGATTCCGAACAAGGC CCAACATCTGCTTTTCAGCAATTGGCTATACTAGATCGCTTCCTTGCGGTCTGGATCTTCCTTGCCATGGCGGTC GGTATCATTTTAGGGAACTTTGTTCCTAATACGAGCAAAGCGCTGGAGAGAGGGAAGTTTGTAGGCGTTTCTGTG CCTATTGCTATCGGTCTCTTGGTCATGATGTATCCCATCCTGTGTAAAGTGAGGTTTGAGACGCTCCATCGATCA TTCCGGGAGAAAGGACTCTGGGTCCAGGTCGGATTCAGCATCGTCGTCAATTGGATTATAGCTCCATTTTTCATG CTTGGTTTGGCCTGGGCCTTTCTCCCTGACGAAAGAGGTCTTCGAGAGGGCCTGATCCTTGTGGGTATCGCTCGA TGTATTGCTATGGTCCTTGTCTGGACAGGACTAGCAGGAGGTGATGGAGAATACTGCGCGATTTTGGTAGCCATT AACTCGATCTTGCAAATGGTCCTCTTTGCACCCCTCGCGACTTTTTTCATCCGCGTCATTGGTGGAGCGAACCAC GGTCTAACAATCGACTATTCGCTGGCTGCAAAAAGCGTCGGTGTATTCCTTGGTATCCCCTTGGGAGCAGCCATC GTCACTCGTCTCTGTCTCAGGTTCCTGATCAGCAGGGAGTGGTATGATAAGCATTTCCTGAAATGGATCAGCCCA CTGTCCCTGATCGGCCTGCTTTTCACCATCTTGGTTCTATTTGCATCGCAGGGGCAACATGTGGTCCACCAGATC GTATCTGTTATCCGGGTGGCGGCTCCTTTGGTTGTCTACTTTGCTGTTATTTTTGGTGTCACTCTTGCCGTAACA AGGCGCTGCGGTTTCGGGTACAGGTTGTCTTGCACGCAAAGTTTCACTGCTGCCAGCAACAACTTTGAACTCGCT ATCGCGGTCGCAATAGCAACGTTTGGCGTAGACAGTGACCAGGCTTTAGCTGCAACGGTTGGGCCCCTCATTGAG GTCCCGGTGCTTCTAGGATTAGTATATGTGGTCAAGTGGGTTGCAAGAAGACAGAAGTGGACCCCTTAG |
| Transcript | >Ani_SJS100_1|g3823.t1 ATGGCGCACGAAGAGAAGGACCACCCCGATGTAGAGGCGTGCAGTGAGAGTCAACATGATGATTCCGAACAAGGC CCAACATCTGCTTTTCAGCAATTGGCTATACTAGATCGCTTCCTTGCGGTCTGGATCTTCCTTGCCATGGCGGTC GGTATCATTTTAGGGAACTTTGTTCCTAATACGAGCAAAGCGCTGGAGAGAGGGAAGTTTGTAGGCGTTTCTGTG CCTATTGCTATCGGTCTCTTGGTCATGATGTATCCCATCCTGTGTAAAGTGAGGTTTGAGACGCTCCATCGATCA TTCCGGGAGAAAGGACTCTGGGTCCAGGTCGGATTCAGCATCGTCGTCAATTGGATTATAGCTCCATTTTTCATG CTTGGTTTGGCCTGGGCCTTTCTCCCTGACGAAAGAGGTCTTCGAGAGGGCCTGATCCTTGTGGGTATCGCTCGA TGTATTGCTATGGTCCTTGTCTGGACAGGACTAGCAGGAGGTGATGGAGAATACTGCGCGATTTTGGTAGCCATT AACTCGATCTTGCAAATGGTCCTCTTTGCACCCCTCGCGACTTTTTTCATCCGCGTCATTGGTGGAGCGAACCAC GGTCTAACAATCGACTATTCGCTGGCTGCAAAAAGCGTCGGTGTATTCCTTGGTATCCCCTTGGGAGCAGCCATC GTCACTCGTCTCTGTCTCAGGTTCCTGATCAGCAGGGAGTGGTATGATAAGCATTTCCTGAAATGGATCAGCCCA CTGTCCCTGATCGGCCTGCTTTTCACCATCTTGGTTCTATTTGCATCGCAGGGGCAACATGTGGTCCACCAGATC GTATCTGTTATCCGGGTGGCGGCTCCTTTGGTTGTCTACTTTGCTGTTATTTTTGGTGTCACTCTTGCCGTAACA AGGCGCTGCGGTTTCGGGTACAGGTTGTCTTGCACGCAAAGTTTCACTGCTGCCAGCAACAACTTTGAACTCGCT ATCGCGGTCGCAATAGCAACGTTTGGCGTAGACAGTGACCAGGCTTTAGCTGCAACGGTTGGGCCCCTCATTGAG GTCCCGGTGCTTCTAGGATTAGTATATGTGGTCAAGTGGGTTGCAAGAAGACAGAAGTGGACCCCTTAG |
| Gene | >Ani_SJS100_1|g3823.t1 ATGGCGCACGAAGAGAAGGACCACCCCGATGTAGAGGCGTGCAGTGAGAGTCAACATGATGATTCCGAACAAGGC CCAACATCTGCTTTTCAGCAATTGGCTATACTAGATCGCTTCCTTGCGGTCTGGATCTTCCTTGCCATGGCGGTC GGTATCATTTTAGGGAACTTTGTTCCTAATACGAGCAAAGCGCTGGAGAGAGGGAAGTTTGTAGGCGTTTCTGTG CCTATTGGTACGTTGTTGTCCGCTCAATGCTTGAAATTGAAAATGAAAGGGTGTATACCAACAGCATTTTAGCTA TCGGTCTCTTGGTCATGATGTATCCCATCCTGTGTAAAGTGAGGTTTGAGACGCTCCATCGATCATTCCGGGAGA AAGGACTCTGGGTCCAGGTCGGATTCAGCATCGTCGTCAATTGGATTATAGCTCCATTTTTCATGGTAGGTCGGT GTCACACCGTGGGCGATAGTAGGCTAATTTGAAGTAGCTTGGTTTGGCCTGGGCCTTTCTCCCTGACGAAAGAGG TCTTCGAGAGGGCCTGATCCTTGTGGGTATCGCTCGATGTATTGCTATGGTATGCCATACCCTGCCTGGGAGTAG TGTAACACGCTGACGAGCATAGGTCCTTGTCTGGACAGGACTAGCAGGAGGTGATGGAGAATACTGCGCGATTTT GGTAGCCATTAACTCGATCTTGCAAATGGTCCTCTTTGCACCCCTCGCGACTTTTTTCATCCGCGTCATTGGTGG AGCGAACCACGGTCTAACAATCGACTATTCGCTGGCTGCAAAAAGCGTCGGTGTATTCCTTGGTATCCCCTTGGG AGCAGCCATCGTCACTCGTCTCTGTCTCAGGTTCCTGATCAGCAGGGAGTGGTATGATAAGCATTTCCTGAAATG GATCAGCCCACTGTCCCTGATCGGCCTGCTTTTCACCATCTTGGTTCTATTTGCATCGCAGGGGCAACATGTGGT CCACCAGATCGTATCTGTTATCCGGGTGGCGGCTCCTTTGGTTGTCTACTTTGCTGTTATTTTTGGTGTCACTCT TGCCGTAACAAGGCGCTGCGGTTTCGGGTACAGGTTGTCTTGCACGCAAAGTTTCACTGCTGCCAGCAACAACTT TGAACTCGCTATCGCGGTCGCAATAGCAACGTTTGGCGTAGACAGTGACCAGGCTTTAGCTGCAACGGTTGGGCC CCTCATTGAGGTCCCGGTGCTTCTAGGATTAGTATATGTGGTCAAGTGGGTTGCAAGAAGACAGAAGTGGACCCC TTAG |