© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g3749.t1 |
| Gene name | |
| Location | scaffold_017:363144..364146 |
| Strand | - |
| Gene length (bp) | 1002 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13398 | Peptidase_M50B | Peptidase M50B-like | 8.6E-62 | 35 | 237 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 29 | 51 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 131 | 148 | 17 |
| 4 | 152 | 171 | 19 |
| 5 | 178 | 195 | 17 |
| 6 | 224 | 246 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3749.t1 MAPYYMVLDQRAVDHHIMKRDLSVTHAQAVTLGVMAAYVVVIALLWNLPYVRWSLWPFKMLVIAFHEFGHAITAC CTGGRVKSISLDPHEGGVTHMQGGMSAVTLPAGYLGSSIIGSLLIFAGFDIVASKVASIVLGVCFLLTLWWARRD WLTIITILLAVGLLVACWFIAHGEALKWVVLFIGVMSALYSVWDICDDLILRKVNTSDASQFAKRYGGSSQCWGV IWSFISLAFIAIAIIAAIAAFRESFSEQEKDSQHFIPTR* |
| Coding | >Ani_SJS100_1|g3749.t1 ATGGCGCCTTACTACATGGTCCTCGACCAACGGGCCGTCGATCACCATATAATGAAGCGCGATCTGAGCGTTACA CACGCCCAGGCAGTAACATTAGGCGTGATGGCAGCGTATGTGGTTGTTATCGCGCTGCTTTGGAATTTGCCGTAT GTGCGGTGGTCGTTGTGGCCGTTTAAGATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATAACAGCCTGC TGCACCGGCGGGCGTGTGAAATCCATCTCGCTTGACCCGCACGAAGGCGGCGTCACGCACATGCAGGGAGGAATG AGCGCCGTGACATTACCTGCTGGATACCTCGGGTCGTCGATTATCGGCTCGCTGTTGATTTTCGCGGGGTTCGAT ATCGTCGCGAGTAAAGTCGCTAGTATTGTTCTGGGGGTGTGCTTTTTGCTCACGCTTTGGTGGGCACGGAGGGAT TGGTTGACTATTATTACTATTTTGCTGGCGGTGGGGTTGCTGGTCGCTTGTTGGTTTATTGCGCATGGGGAGGCG TTGAAGTGGGTTGTGCTGTTTATTGGGGTTATGTCTGCACTTTATAGTGTCTGGGATATTTGTGACGACCTTATC CTTCGCAAAGTCAACACCTCCGATGCTAGCCAGTTCGCTAAGAGATACGGAGGATCCTCGCAGTGCTGGGGTGTT ATCTGGTCGTTTATTTCCCTTGCGTTCATTGCGATCGCTATCATTGCTGCGATTGCTGCGTTCCGTGAGTCGTTC AGCGAGCAGGAGAAGGATTCGCAGCATTTCATCCCGACTCGGTGA |
| Transcript | >Ani_SJS100_1|g3749.t1 ATGGCGCCTTACTACATGGTCCTCGACCAACGGGCCGTCGATCACCATATAATGAAGCGCGATCTGAGCGTTACA CACGCCCAGGCAGTAACATTAGGCGTGATGGCAGCGTATGTGGTTGTTATCGCGCTGCTTTGGAATTTGCCGTAT GTGCGGTGGTCGTTGTGGCCGTTTAAGATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATAACAGCCTGC TGCACCGGCGGGCGTGTGAAATCCATCTCGCTTGACCCGCACGAAGGCGGCGTCACGCACATGCAGGGAGGAATG AGCGCCGTGACATTACCTGCTGGATACCTCGGGTCGTCGATTATCGGCTCGCTGTTGATTTTCGCGGGGTTCGAT ATCGTCGCGAGTAAAGTCGCTAGTATTGTTCTGGGGGTGTGCTTTTTGCTCACGCTTTGGTGGGCACGGAGGGAT TGGTTGACTATTATTACTATTTTGCTGGCGGTGGGGTTGCTGGTCGCTTGTTGGTTTATTGCGCATGGGGAGGCG TTGAAGTGGGTTGTGCTGTTTATTGGGGTTATGTCTGCACTTTATAGTGTCTGGGATATTTGTGACGACCTTATC CTTCGCAAAGTCAACACCTCCGATGCTAGCCAGTTCGCTAAGAGATACGGAGGATCCTCGCAGTGCTGGGGTGTT ATCTGGTCGTTTATTTCCCTTGCGTTCATTGCGATCGCTATCATTGCTGCGATTGCTGCGTTCCGTGAGTCGTTC AGCGAGCAGGAGAAGGATTCGCAGCATTTCATCCCGACTCGGTGA |
| Gene | >Ani_SJS100_1|g3749.t1 ATGGCGCCTTACTACATGGTCCTCGACCAACGGGCCGTCGATCACCATATAATGAAGCGCGATCTGAGCGTTACA CACGCCCAGGCAGTAACATTAGGCGTGATGGCAGCGTATGTGGTTGTTATCGCGCTGCTTTGGAATTTGCCGTAT GTGCGGTGGTCGTTGTGGCCGTTTAAGGTAATAACCAACCCCCTCACCCATTCTCTTCCTACCCCAGAATCATGA ATGCTAACAAAGAATAGATGCTCGTCATCGCCTTCCACGAATTCGGCCACGCCATAACAGCCTGCTGCACCGGCG GGCGTGTGAAATCCATCTCGCTTGACCCGCACGAAGGCGGCGTCACGCACATGCAGGGAGGAATGAGCGCCGTGA CATTACCTGCTGGATACCTCGGGTCGTCGATTATCGGCTCGCTGTTGATTTTCGCGGGGTTCGATATCGTCGCGA GTAAAGTCGCTAGTATTGTTCTGGGGGTGTGCTTTTTGCTCACGCTTTGGTGGGCACGGAGGGATTGGTTGACTA TTATTACTATTTTGCTGGCGGTGGGGTTGCTGGTCGCTTGTTGGTTTATTGCGCATGGGGAGGCGTTGAAGTGGG TTGTGGTATGTTCCCTTTCTTCTTTTTGTTTTGTTCATTGTATGAGGACGGTGTGCTGACATGCGGGATATAGCT GTTTATTGGGGTTATGTCTGCACTTTATAGTGTCTGGGATATTGTGAGTTCTCTTATATCTTTCCTTGTCATCTT TGATGTGGTATGATGGCGGTGATGTGCTAACTGCAAGTATAGTGTGACGACCTTATCCTTCGCAAAGTCAACACC TCCGATGCTAGCCAGTTCGCTAAGAGATACGGAGGATCCTCGCAGTGCTGGGGTGTTATCTGGTCGTTTATTTCC CTTGCGTTCATTGCGATCGCTATCATTGCTGCGATTGCTGCGTTCCGTGAGTCGTTCAGCGAGCAGGAGAAGGAT TCGCAGCATTTCATCCCGACTCGGTGA |