Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g3677.t1
Gene name
Locationscaffold_017:147503..148054
Strand+
Gene length (bp)551
Transcript length (bp)330
Coding sequence length (bp)330
Protein length (aa) 110

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09446 VMA21 VMA21-like domain 3.0E-12 38 90

GO

GO Term Description Terminal node
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly Yes
GO:0071840 cellular component organization or biogenesis No
GO:0008150 biological_process No
GO:0070070 proton-transporting V-type ATPase complex assembly No
GO:0070071 proton-transporting two-sector ATPase complex assembly No
GO:0022607 cellular component assembly No
GO:0009987 cellular process No
GO:0065003 protein-containing complex assembly No
GO:0016043 cellular component organization No
GO:0043933 protein-containing complex organization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.5

Transmembrane Domains

Domain # Start End Length
1 42 64 22
2 68 90 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g3677.t1
MATRRSAPKSPSPKDVVASSGSPKPSDSDVTPAVPTNVIMKLLGFSVAMVVIPIGMYFVTVDFGASATVGGIVAA
IMANVVLFAYIYVAWKDDQAEREADAKYKEKKAQ*
Coding >Ani_SJS100_1|g3677.t1
ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC
TCTGACTCAGATGTGACCCCTGCCGTTCCCACAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCATGGTC
GTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCC
ATCATGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGAC
GCTAAGTACAAGGAGAAAAAAGCACAGTGA
Transcript >Ani_SJS100_1|g3677.t1
ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC
TCTGACTCAGATGTGACCCCTGCCGTTCCCACAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCATGGTC
GTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCC
ATCATGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGAC
GCTAAGTACAAGGAGAAAAAAGCACAGTGA
Gene >Ani_SJS100_1|g3677.t1
ATGGCCACTCGTCGCTCCGCACCGAAATCTCCGTCTCCCAAGGATGTTGTCGCGTCTTCGGGCTCTCCAAAGCCC
TCTGACTCAGATGTGACCCCTGCCGTTCCCACGTAGGTGCATCTCATTCGTCCCCTACCAACGAACACTAGGCCA
CATGGCGGCTATCCTGAACTACCGGGTTCAGCCCAACGAACGCATACACCTTATCAATACATATCACGCACATAC
GCCCCCTCCCTAACTCTGACTAACACATCACTTCCAGAAATGTAATCATGAAACTTCTCGGATTCTCCGTCGCCA
TGGTCGTCATTCCTATCGGAATGTACTTTGTTACAGTGGACTTTGGAGGTGAGAATCTCATCCAAACAACCCCCC
ATTACTAATGTTCTTATATTAAATGACACATCTGAGCAGCAAGCGCCACAGTCGGCGGTATCGTGGCTGCCATCA
TGGCGAACGTAGTTCTCTTCGCGTACATCTATGTTGCGTGGAAGGATGATCAGGCGGAGAGGGAAGCTGACGCTA
AGTACAAGGAGAAAAAAGCACAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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