© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g3640.t1 |
| Gene name | |
| Location | scaffold_017:43574..44348 |
| Strand | - |
| Gene length (bp) | 774 |
| Transcript length (bp) | 774 |
| Coding sequence length (bp) | 774 |
| Protein length (aa) | 258 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00829 | Ribosomal_L21p | Ribosomal prokaryotic L21 protein | 1.9E-06 | 124 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043226 | organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3640.t1 MFSRTTLARALALPIEHTAARSSILASTSSTTTFRACLHQATTTSYSTTTSSHPSAPLSATPRAQTSTPIEQPHF LTPKNTIPETRADVPLNKQPVAPTFDAPLKVSQSLLDMLPYLTSQKPHYITAHLHDRPYLLTEGDQLRLPFLMPK VKSGDILRFNRASVLGSREFSLKGGDKYLDERLFECRVRVMGFESEPLRITEKTKRRRRHVQKVTSKHRYTILRV MDVKVKTAEELLDEGAVVVQSADSAANVELKE* |
| Coding | >Ani_SJS100_1|g3640.t1 ATGTTCTCTCGAACTACGCTCGCACGGGCACTTGCCCTGCCCATCGAGCACACCGCCGCCCGATCCTCCATCCTC GCCAGCACCAGCAGCACCACTACTTTCCGTGCCTGCCTTCACCAAGCCACCACTACATCTTATTCTACAACAACA TCATCACACCCTTCCGCTCCTCTAAGCGCCACCCCCCGGGCCCAAACCTCCACCCCCATCGAACAACCTCACTTC CTGACGCCCAAAAACACCATCCCCGAAACCCGCGCCGATGTGCCTCTCAACAAACAGCCCGTGGCCCCGACCTTT GACGCTCCATTGAAAGTGTCTCAATCCCTCCTCGACATGCTGCCTTACCTCACCTCGCAAAAGCCGCACTACATT ACCGCCCATCTCCACGACAGACCCTACCTGCTTACCGAGGGTGACCAGCTGCGTCTGCCATTCCTCATGCCCAAG GTAAAATCGGGCGATATCCTTCGGTTTAACCGGGCGTCTGTGCTCGGTTCTCGTGAGTTCTCGCTCAAGGGCGGC GACAAGTACCTTGATGAGCGGTTGTTTGAGTGCCGGGTCCGGGTGATGGGTTTCGAGTCGGAGCCTTTGCGCATC ACGGAGAAGACGAAGCGGAGACGGCGTCATGTGCAGAAGGTTACGAGCAAGCATCGTTATACCATCCTGCGGGTT ATGGATGTTAAGGTTAAGACTGCGGAGGAGTTGTTGGACGAGGGTGCGGTTGTGGTGCAAAGTGCTGATTCCGCG GCCAATGTTGAACTGAAGGAGTAA |
| Transcript | >Ani_SJS100_1|g3640.t1 ATGTTCTCTCGAACTACGCTCGCACGGGCACTTGCCCTGCCCATCGAGCACACCGCCGCCCGATCCTCCATCCTC GCCAGCACCAGCAGCACCACTACTTTCCGTGCCTGCCTTCACCAAGCCACCACTACATCTTATTCTACAACAACA TCATCACACCCTTCCGCTCCTCTAAGCGCCACCCCCCGGGCCCAAACCTCCACCCCCATCGAACAACCTCACTTC CTGACGCCCAAAAACACCATCCCCGAAACCCGCGCCGATGTGCCTCTCAACAAACAGCCCGTGGCCCCGACCTTT GACGCTCCATTGAAAGTGTCTCAATCCCTCCTCGACATGCTGCCTTACCTCACCTCGCAAAAGCCGCACTACATT ACCGCCCATCTCCACGACAGACCCTACCTGCTTACCGAGGGTGACCAGCTGCGTCTGCCATTCCTCATGCCCAAG GTAAAATCGGGCGATATCCTTCGGTTTAACCGGGCGTCTGTGCTCGGTTCTCGTGAGTTCTCGCTCAAGGGCGGC GACAAGTACCTTGATGAGCGGTTGTTTGAGTGCCGGGTCCGGGTGATGGGTTTCGAGTCGGAGCCTTTGCGCATC ACGGAGAAGACGAAGCGGAGACGGCGTCATGTGCAGAAGGTTACGAGCAAGCATCGTTATACCATCCTGCGGGTT ATGGATGTTAAGGTTAAGACTGCGGAGGAGTTGTTGGACGAGGGTGCGGTTGTGGTGCAAAGTGCTGATTCCGCG GCCAATGTTGAACTGAAGGAGTAA |
| Gene | >Ani_SJS100_1|g3640.t1 ATGTTCTCTCGAACTACGCTCGCACGGGCACTTGCCCTGCCCATCGAGCACACCGCCGCCCGATCCTCCATCCTC GCCAGCACCAGCAGCACCACTACTTTCCGTGCCTGCCTTCACCAAGCCACCACTACATCTTATTCTACAACAACA TCATCACACCCTTCCGCTCCTCTAAGCGCCACCCCCCGGGCCCAAACCTCCACCCCCATCGAACAACCTCACTTC CTGACGCCCAAAAACACCATCCCCGAAACCCGCGCCGATGTGCCTCTCAACAAACAGCCCGTGGCCCCGACCTTT GACGCTCCATTGAAAGTGTCTCAATCCCTCCTCGACATGCTGCCTTACCTCACCTCGCAAAAGCCGCACTACATT ACCGCCCATCTCCACGACAGACCCTACCTGCTTACCGAGGGTGACCAGCTGCGTCTGCCATTCCTCATGCCCAAG GTAAAATCGGGCGATATCCTTCGGTTTAACCGGGCGTCTGTGCTCGGTTCTCGTGAGTTCTCGCTCAAGGGCGGC GACAAGTACCTTGATGAGCGGTTGTTTGAGTGCCGGGTCCGGGTGATGGGTTTCGAGTCGGAGCCTTTGCGCATC ACGGAGAAGACGAAGCGGAGACGGCGTCATGTGCAGAAGGTTACGAGCAAGCATCGTTATACCATCCTGCGGGTT ATGGATGTTAAGGTTAAGACTGCGGAGGAGTTGTTGGACGAGGGTGCGGTTGTGGTGCAAAGTGCTGATTCCGCG GCCAATGTTGAACTGAAGGAGTAA |