© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g3347.t1 |
| Gene name | |
| Location | scaffold_015:197356..198394 |
| Strand | + |
| Gene length (bp) | 1038 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11712 | Vma12 | Endoplasmic reticulum-based factor for assembly of V-ATPase | 3.8E-44 | 69 | 245 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0008150 | biological_process | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0022607 | cellular component assembly | No |
| GO:0009987 | cellular process | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0043933 | protein-containing complex organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 161 | 183 | 22 |
| 2 | 216 | 238 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g3347.t1 MVLLTTTPPILTAIEALPPTSRHDFSLPDTLKLEDPISHDQLIRIARYFRQTDTSSSTYSIAETKTLNSLLRGTK VYIPPPPKKPEPSPEYLALKARLLAAAETDAYNRMTSSSTFSSSAFFPPSSRTPAPTKPSIFTSSTPTVEALHNK SNNNNEETDPLTPGLVLNIFLSVLITGFSVYWALRSFRSPEMLVSTVARIWRGTGTGQGVSESVKVLVSLGAAVV VGVAEVMIYAIYLRKVEVAKGRERRVKERKVVVESERVGGKVKQGDEDGAERVGGKEEEVIWGRGVNGGLRRRVR EKWEEKEKNVDMQRDGSSE* |
| Coding | >Ani_SJS100_1|g3347.t1 ATGGTTCTCCTAACAACAACACCTCCCATTCTCACCGCCATCGAGGCCCTCCCTCCTACCTCGCGACATGACTTC TCCCTCCCCGATACCTTGAAACTGGAGGACCCAATCTCCCACGACCAATTGATCAGAATAGCTCGATACTTCCGA CAAACAGATACTTCCAGCTCCACCTATTCGATTGCTGAAACCAAAACCCTGAACTCCCTCCTCCGCGGAACAAAA GTCTACATTCCCCCGCCGCCCAAGAAACCCGAGCCGAGCCCCGAATACCTCGCCCTCAAAGCGCGCCTCCTCGCC GCGGCCGAAACAGACGCCTACAACCGCATGACTTCATCCTCGACTTTCTCCTCATCCGCTTTCTTCCCTCCATCA TCCAGAACCCCAGCACCAACCAAACCCTCAATCTTCACCTCTTCAACTCCCACCGTCGAAGCCCTGCACAACAAG TCTAATAATAACAATGAAGAAACAGATCCCCTCACACCCGGCCTCGTCCTAAACATCTTCCTCTCCGTCCTCATC ACTGGGTTCAGCGTGTACTGGGCTCTGCGGAGTTTCCGGTCCCCCGAGATGCTAGTCTCCACTGTAGCAAGGATT TGGAGGGGAACGGGCACAGGGCAAGGAGTATCGGAGTCGGTGAAGGTTTTGGTGTCGTTGGGGGCGGCGGTCGTG GTGGGGGTGGCGGAGGTGATGATATATGCGATTTATTTGAGAAAGGTGGAGGTTGCAAAGGGGAGGGAGAGGAGG GTGAAGGAGAGGAAGGTGGTTGTGGAAAGTGAGAGGGTTGGGGGGAAGGTTAAGCAGGGTGATGAGGATGGGGCG GAGAGGGTTGGGGGCAAGGAGGAGGAGGTTATCTGGGGAAGGGGAGTGAATGGGGGGTTGAGGAGGAGGGTGAGG GAGAAATGGGAGGAGAAGGAGAAGAATGTGGATATGCAGAGGGATGGGAGTAGCGAATAG |
| Transcript | >Ani_SJS100_1|g3347.t1 ATGGTTCTCCTAACAACAACACCTCCCATTCTCACCGCCATCGAGGCCCTCCCTCCTACCTCGCGACATGACTTC TCCCTCCCCGATACCTTGAAACTGGAGGACCCAATCTCCCACGACCAATTGATCAGAATAGCTCGATACTTCCGA CAAACAGATACTTCCAGCTCCACCTATTCGATTGCTGAAACCAAAACCCTGAACTCCCTCCTCCGCGGAACAAAA GTCTACATTCCCCCGCCGCCCAAGAAACCCGAGCCGAGCCCCGAATACCTCGCCCTCAAAGCGCGCCTCCTCGCC GCGGCCGAAACAGACGCCTACAACCGCATGACTTCATCCTCGACTTTCTCCTCATCCGCTTTCTTCCCTCCATCA TCCAGAACCCCAGCACCAACCAAACCCTCAATCTTCACCTCTTCAACTCCCACCGTCGAAGCCCTGCACAACAAG TCTAATAATAACAATGAAGAAACAGATCCCCTCACACCCGGCCTCGTCCTAAACATCTTCCTCTCCGTCCTCATC ACTGGGTTCAGCGTGTACTGGGCTCTGCGGAGTTTCCGGTCCCCCGAGATGCTAGTCTCCACTGTAGCAAGGATT TGGAGGGGAACGGGCACAGGGCAAGGAGTATCGGAGTCGGTGAAGGTTTTGGTGTCGTTGGGGGCGGCGGTCGTG GTGGGGGTGGCGGAGGTGATGATATATGCGATTTATTTGAGAAAGGTGGAGGTTGCAAAGGGGAGGGAGAGGAGG GTGAAGGAGAGGAAGGTGGTTGTGGAAAGTGAGAGGGTTGGGGGGAAGGTTAAGCAGGGTGATGAGGATGGGGCG GAGAGGGTTGGGGGCAAGGAGGAGGAGGTTATCTGGGGAAGGGGAGTGAATGGGGGGTTGAGGAGGAGGGTGAGG GAGAAATGGGAGGAGAAGGAGAAGAATGTGGATATGCAGAGGGATGGGAGTAGCGAATAG |
| Gene | >Ani_SJS100_1|g3347.t1 ATGGTTCTCCTAACAACAACACCTCCCATTCTCACCGCCATCGAGGCCCTCCCTCCTACCTCGCGACATGACTTC TCCCTCCCCGATACCTTGAAACTGGAGGACCCAATCTCCCACGACCAATTGATCAGAATAGCTCGATACTTCCGA CAAACAGATACTTCCAGCTCCACCTATTCGATTGCTGAAACCAAAACCCTGAACTCCCTCCTCCGCGGAACAAAA GTCTACATTCCCCCGCCGCCCAAGAAACCCGAGCCGGTAAACACCTATCTCCAACACCTCCCCAACACTATACCA ATAAGCATACACAAAACTAACAAACGACAATAAATATAGAGCCCCGAATACCTCGCCCTCAAAGCGCGCCTCCTC GCCGCGGCCGAAACAGACGCCTACAACCGCATGACTTCATCCTCGACTTTCTCCTCATCCGCTTTCTTCCCTCCA TCATCCAGAACCCCAGCACCAACCAAACCCTCAATCTTCACCTCTTCAACTCCCACCGTCGAAGCCCTGCACAAC AAGTCTAATAATAACAATGAAGAAACAGATCCCCTCACACCCGGCCTCGTCCTAAACATCTTCCTCTCCGTCCTC ATCACTGGGTTCAGCGTGTACTGGGCTCTGCGGAGTTTCCGGTCCCCCGAGATGCTAGTCTCCACTGTAGCAAGG ATTTGGAGGGGAACGGGCACAGGGCAAGGAGTATCGGAGTCGGTGAAGGTTTTGGTGTCGTTGGGGGCGGCGGTC GTGGTGGGGGTGGCGGAGGTGATGATATATGCGATTTATTTGAGAAAGGTGGAGGTTGCAAAGGGGAGGGAGAGG AGGGTGAAGGAGAGGAAGGTGGTTGTGGAAAGTGAGAGGGTTGGGGGGAAGGTTAAGCAGGGTGATGAGGATGGG GCGGAGAGGGTTGGGGGCAAGGAGGAGGAGGTTATCTGGGGAAGGGGAGTGAATGGGGGGTTGAGGAGGAGGGTG AGGGAGAAATGGGAGGAGAAGGAGAAGAATGTGGATATGCAGAGGGATGGGAGTAGCGAATAG |