Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g3187.t1
Gene name
Locationscaffold_014:235500..236100
Strand+
Gene length (bp)600
Transcript length (bp)531
Coding sequence length (bp)531
Protein length (aa) 177

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05620 TMEM208_SND2 SRP-independent targeting protein 2/TMEM208 1.6E-58 1 169

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 21 38 17
2 113 132 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g3187.t1
MAQKAAKTLAARNASLLTRTHLISFALHFLFLALHWLFNRPRSLTPYFTLACPTLIIEFYLERLGRPVYNPADGS
LRSPGEDLGAAGLTEYMWDVLYWTWGCIGAACLFGDRAWWLWIVVPVYSVWLAYSTFMGMKSGLAGMGGAGAGAG
QEQGGAAESKRQKKMEKRGARGVQYR*
Coding >Ani_SJS100_1|g3187.t1
ATGGCTCAAAAAGCCGCCAAAACCCTCGCCGCGCGCAACGCGTCCCTCCTCACCCGCACCCACCTCATCAGTTTC
GCCCTACACTTCCTCTTCCTCGCTCTCCACTGGCTCTTCAACCGCCCTCGCTCTCTAACCCCCTACTTCACACTC
GCCTGCCCGACCCTCATCATCGAATTCTACCTCGAACGGCTCGGCCGCCCGGTCTACAACCCCGCTGATGGATCC
CTCCGCTCTCCCGGAGAGGATCTCGGCGCCGCAGGACTGACGGAATACATGTGGGACGTGCTGTACTGGACGTGG
GGGTGCATTGGTGCTGCCTGCTTGTTTGGCGATCGTGCTTGGTGGTTGTGGATCGTCGTGCCAGTGTATTCGGTG
TGGTTGGCGTACAGTACCTTTATGGGCATGAAGAGTGGGTTGGCAGGGATGGGTGGTGCTGGTGCGGGTGCTGGG
CAGGAGCAAGGAGGTGCGGCGGAGAGTAAGAGGCAGAAGAAGATGGAGAAGAGGGGTGCCAGGGGGGTGCAGTAT
CGCTGA
Transcript >Ani_SJS100_1|g3187.t1
ATGGCTCAAAAAGCCGCCAAAACCCTCGCCGCGCGCAACGCGTCCCTCCTCACCCGCACCCACCTCATCAGTTTC
GCCCTACACTTCCTCTTCCTCGCTCTCCACTGGCTCTTCAACCGCCCTCGCTCTCTAACCCCCTACTTCACACTC
GCCTGCCCGACCCTCATCATCGAATTCTACCTCGAACGGCTCGGCCGCCCGGTCTACAACCCCGCTGATGGATCC
CTCCGCTCTCCCGGAGAGGATCTCGGCGCCGCAGGACTGACGGAATACATGTGGGACGTGCTGTACTGGACGTGG
GGGTGCATTGGTGCTGCCTGCTTGTTTGGCGATCGTGCTTGGTGGTTGTGGATCGTCGTGCCAGTGTATTCGGTG
TGGTTGGCGTACAGTACCTTTATGGGCATGAAGAGTGGGTTGGCAGGGATGGGTGGTGCTGGTGCGGGTGCTGGG
CAGGAGCAAGGAGGTGCGGCGGAGAGTAAGAGGCAGAAGAAGATGGAGAAGAGGGGTGCCAGGGGGGTGCAGTAT
CGCTGA
Gene >Ani_SJS100_1|g3187.t1
ATGGCTCAAGTCCGTCCACCCCACCCCCTCCTTAAACTAAAACCCTCACATTCAACCAACTAAACTACACCCCCA
CAGAAAGCCGCCAAAACCCTCGCCGCGCGCAACGCGTCCCTCCTCACCCGCACCCACCTCATCAGTTTCGCCCTA
CACTTCCTCTTCCTCGCTCTCCACTGGCTCTTCAACCGCCCTCGCTCTCTAACCCCCTACTTCACACTCGCCTGC
CCGACCCTCATCATCGAATTCTACCTCGAACGGCTCGGCCGCCCGGTCTACAACCCCGCTGATGGATCCCTCCGC
TCTCCCGGAGAGGATCTCGGCGCCGCAGGACTGACGGAATACATGTGGGACGTGCTGTACTGGACGTGGGGGTGC
ATTGGTGCTGCCTGCTTGTTTGGCGATCGTGCTTGGTGGTTGTGGATCGTCGTGCCAGTGTATTCGGTGTGGTTG
GCGTACAGTACCTTTATGGGCATGAAGAGTGGGTTGGCAGGGATGGGTGGTGCTGGTGCGGGTGCTGGGCAGGAG
CAAGGAGGTGCGGCGGAGAGTAAGAGGCAGAAGAAGATGGAGAAGAGGGGTGCCAGGGGGGTGCAGTATCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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