Protein ID | Ani_SJS100_1|g3016.t1 |
Gene name | |
Location | scaffold_013:242334..244506 |
Strand | - |
Gene length (bp) | 2172 |
Transcript length (bp) | 2121 |
Coding sequence length (bp) | 2121 |
Protein length (aa) | 707 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06011 | TRP | Transient receptor potential (TRP) ion channel | 2.2E-154 | 167 | 594 |
PF14558 | TRP_N | ML-like domain | 5.2E-42 | 26 | 162 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999032 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 166 | 188 | 22 |
2 | 321 | 343 | 22 |
3 | 369 | 391 | 22 |
4 | 401 | 423 | 22 |
5 | 457 | 479 | 22 |
6 | 483 | 505 | 22 |
7 | 518 | 537 | 19 |
8 | 547 | 569 | 22 |
Orthofinder run ID | 3 |
Orthogroup | 3279 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g3016.t1 MRWSTCLTSALLASTAPLAAATRLIESNALNICQDSNNFTATYFSVRFTPENRSLVLSFDGVAAISGKVTADLSV DVYGYQLTGETLDPCKMNIEGLCPMSAGAINVQNAPVTIPEDVVRRIPGIAYTVPDLDATVRVYINSTDTGTSIT CLEATLSNGKTVYQKGVGWTTAVISGVGLIASAVAAGLGNSNTAAHVAANVLAFFSFMQSQAMFGMISVHMPPIV EAWTQNMQWSMGIIHVKFLDTICTWYQRATGGTPSTVLSELSTTSVEVLKRKRSFDGVTNVFKRQYAQSETATTG TTVVRGIDRVGFRAGIEGTNIFLTGFIFFVFFVAVVMIIVALLKVGSHFLAKKGKTKTDKFGDFHVSKGILYRLI FIGFPQMCVLCLWEFTQHDSAAEVVLAVIMLVSMICTLGWAAFRVIILARRSVAMHRNPAYILYSDEACLNKLGF LYVHYRATAYYFLVFALLYIFVKAMFISLSQPAPVVQTVAMVIIETLALIGISIVRPWMDKKTNGYNIAIASINF LNSILLLFFSNVFDQPGIVTGVMGVIFFVYNAAFALILLLLVLYSAVNAIFSKNPDMRYRPMRDDRGSFAKSGSQ LITELDALGTTARGEGTPEMWNKGSLIDDTGSVASEGLHRSHQDLARDTAPGREMSETPVSQANLFPVSRGSSPV HRVASMNAAGVRRSLLSDSDTASATHPHANL* |
Coding | >Ani_SJS100_1|g3016.t1 ATGCGCTGGTCAACGTGTCTCACCAGCGCCCTCCTCGCGTCTACAGCACCGCTGGCCGCTGCAACCAGACTCATT GAATCAAATGCTTTGAATATCTGCCAGGATAGCAACAATTTTACTGCCACCTACTTCAGCGTCCGCTTCACGCCC GAGAATCGTTCCTTGGTTCTGAGTTTCGATGGCGTGGCCGCCATCTCCGGCAAAGTTACTGCCGATCTCTCGGTC GACGTCTATGGCTACCAGTTGACTGGTGAGACGTTGGACCCGTGTAAAATGAATATAGAGGGTCTCTGTCCGATG AGCGCCGGTGCCATTAATGTCCAGAACGCCCCGGTCACAATTCCGGAAGATGTGGTGCGCCGGATCCCGGGTATC GCATACACTGTGCCAGACCTTGATGCCACCGTTCGGGTTTACATCAACTCCACGGATACCGGCACCAGTATTACA TGTCTCGAAGCGACCTTGTCGAATGGAAAAACAGTCTACCAGAAAGGAGTCGGATGGACGACCGCGGTGATCTCC GGCGTCGGGCTTATCGCTTCAGCTGTTGCAGCTGGTCTGGGCAACTCGAACACTGCGGCCCATGTCGCCGCTAAC GTGCTGGCCTTTTTCAGCTTCATGCAATCACAGGCCATGTTTGGGATGATCTCGGTCCACATGCCGCCGATAGTG GAAGCATGGACCCAGAACATGCAATGGAGCATGGGGATCATCCATGTTAAGTTCTTGGATACCATTTGTACCTGG TACCAAAGGGCAACTGGCGGTACGCCGTCGACTGTCTTGTCCGAGCTCTCGACTACGTCTGTTGAAGTTCTGAAA CGAAAGCGATCTTTTGATGGCGTCACCAATGTGTTCAAACGACAATATGCCCAGTCGGAGACTGCCACTACCGGC ACCACAGTGGTGCGGGGAATCGATCGTGTGGGGTTCAGGGCCGGCATTGAGGGCACCAATATCTTCCTCACCGGC TTCATCTTCTTCGTCTTTTTCGTCGCCGTGGTGATGATCATCGTCGCGTTGCTCAAGGTGGGAAGCCACTTTCTG GCGAAGAAAGGGAAGACCAAGACCGACAAGTTTGGCGACTTTCATGTGTCGAAAGGTATCCTCTATCGGCTCATT TTCATCGGATTTCCGCAGATGTGCGTCCTTTGTCTGTGGGAATTTACGCAGCATGATTCGGCAGCCGAAGTCGTT TTGGCGGTGATCATGTTGGTTTCCATGATCTGCACGCTGGGCTGGGCTGCCTTCCGAGTCATCATTCTCGCACGG AGGTCGGTAGCGATGCATCGCAACCCGGCCTATATCCTCTACTCAGACGAGGCATGTCTGAACAAGCTGGGGTTT TTGTATGTGCATTACCGAGCGACCGCCTACTACTTCCTCGTGTTCGCACTACTGTATATCTTCGTCAAGGCGATG TTCATCAGTCTGAGCCAGCCGGCCCCGGTGGTGCAGACGGTGGCCATGGTGATTATTGAGACCTTGGCGCTTATT GGGATCAGTATCGTGCGACCGTGGATGGACAAAAAAACCAATGGCTACAATATCGCCATCGCATCCATCAACTTT TTAAATTCCATCTTGTTGCTTTTCTTTTCCAACGTCTTCGACCAGCCCGGCATCGTGACCGGTGTGATGGGGGTC ATTTTCTTTGTGTACAATGCCGCCTTTGCGCTCATTCTGCTCCTCCTCGTTCTTTACTCCGCCGTTAACGCTATC TTCTCGAAGAATCCGGACATGCGCTATCGGCCGATGCGGGACGACCGGGGATCCTTTGCCAAGTCGGGGAGCCAG TTGATCACGGAGCTGGATGCGCTCGGCACGACTGCTCGGGGTGAGGGCACGCCGGAGATGTGGAACAAAGGCAGT TTGATCGACGACACTGGGTCTGTTGCTAGTGAGGGACTGCATCGAAGTCACCAAGATCTGGCCCGCGACACTGCT CCTGGTCGTGAGATGTCTGAGACGCCCGTCAGCCAGGCGAATTTGTTTCCCGTCAGTCGAGGGAGCAGTCCTGTT CATCGAGTAGCGTCCATGAATGCCGCAGGTGTGCGTCGCAGTCTGTTGAGTGACAGCGATACGGCATCGGCGACT CACCCGCATGCAAACCTATAG |
Transcript | >Ani_SJS100_1|g3016.t1 ATGCGCTGGTCAACGTGTCTCACCAGCGCCCTCCTCGCGTCTACAGCACCGCTGGCCGCTGCAACCAGACTCATT GAATCAAATGCTTTGAATATCTGCCAGGATAGCAACAATTTTACTGCCACCTACTTCAGCGTCCGCTTCACGCCC GAGAATCGTTCCTTGGTTCTGAGTTTCGATGGCGTGGCCGCCATCTCCGGCAAAGTTACTGCCGATCTCTCGGTC GACGTCTATGGCTACCAGTTGACTGGTGAGACGTTGGACCCGTGTAAAATGAATATAGAGGGTCTCTGTCCGATG AGCGCCGGTGCCATTAATGTCCAGAACGCCCCGGTCACAATTCCGGAAGATGTGGTGCGCCGGATCCCGGGTATC GCATACACTGTGCCAGACCTTGATGCCACCGTTCGGGTTTACATCAACTCCACGGATACCGGCACCAGTATTACA TGTCTCGAAGCGACCTTGTCGAATGGAAAAACAGTCTACCAGAAAGGAGTCGGATGGACGACCGCGGTGATCTCC GGCGTCGGGCTTATCGCTTCAGCTGTTGCAGCTGGTCTGGGCAACTCGAACACTGCGGCCCATGTCGCCGCTAAC GTGCTGGCCTTTTTCAGCTTCATGCAATCACAGGCCATGTTTGGGATGATCTCGGTCCACATGCCGCCGATAGTG GAAGCATGGACCCAGAACATGCAATGGAGCATGGGGATCATCCATGTTAAGTTCTTGGATACCATTTGTACCTGG TACCAAAGGGCAACTGGCGGTACGCCGTCGACTGTCTTGTCCGAGCTCTCGACTACGTCTGTTGAAGTTCTGAAA CGAAAGCGATCTTTTGATGGCGTCACCAATGTGTTCAAACGACAATATGCCCAGTCGGAGACTGCCACTACCGGC ACCACAGTGGTGCGGGGAATCGATCGTGTGGGGTTCAGGGCCGGCATTGAGGGCACCAATATCTTCCTCACCGGC TTCATCTTCTTCGTCTTTTTCGTCGCCGTGGTGATGATCATCGTCGCGTTGCTCAAGGTGGGAAGCCACTTTCTG GCGAAGAAAGGGAAGACCAAGACCGACAAGTTTGGCGACTTTCATGTGTCGAAAGGTATCCTCTATCGGCTCATT TTCATCGGATTTCCGCAGATGTGCGTCCTTTGTCTGTGGGAATTTACGCAGCATGATTCGGCAGCCGAAGTCGTT TTGGCGGTGATCATGTTGGTTTCCATGATCTGCACGCTGGGCTGGGCTGCCTTCCGAGTCATCATTCTCGCACGG AGGTCGGTAGCGATGCATCGCAACCCGGCCTATATCCTCTACTCAGACGAGGCATGTCTGAACAAGCTGGGGTTT TTGTATGTGCATTACCGAGCGACCGCCTACTACTTCCTCGTGTTCGCACTACTGTATATCTTCGTCAAGGCGATG TTCATCAGTCTGAGCCAGCCGGCCCCGGTGGTGCAGACGGTGGCCATGGTGATTATTGAGACCTTGGCGCTTATT GGGATCAGTATCGTGCGACCGTGGATGGACAAAAAAACCAATGGCTACAATATCGCCATCGCATCCATCAACTTT TTAAATTCCATCTTGTTGCTTTTCTTTTCCAACGTCTTCGACCAGCCCGGCATCGTGACCGGTGTGATGGGGGTC ATTTTCTTTGTGTACAATGCCGCCTTTGCGCTCATTCTGCTCCTCCTCGTTCTTTACTCCGCCGTTAACGCTATC TTCTCGAAGAATCCGGACATGCGCTATCGGCCGATGCGGGACGACCGGGGATCCTTTGCCAAGTCGGGGAGCCAG TTGATCACGGAGCTGGATGCGCTCGGCACGACTGCTCGGGGTGAGGGCACGCCGGAGATGTGGAACAAAGGCAGT TTGATCGACGACACTGGGTCTGTTGCTAGTGAGGGACTGCATCGAAGTCACCAAGATCTGGCCCGCGACACTGCT CCTGGTCGTGAGATGTCTGAGACGCCCGTCAGCCAGGCGAATTTGTTTCCCGTCAGTCGAGGGAGCAGTCCTGTT CATCGAGTAGCGTCCATGAATGCCGCAGGTGTGCGTCGCAGTCTGTTGAGTGACAGCGATACGGCATCGGCGACT CACCCGCATGCAAACCTATAG |
Gene | >Ani_SJS100_1|g3016.t1 ATGCGCTGGTCAACGTGTCTCACCAGCGCCCTCCTCGCGTCTACAGCACCGCTGGCCGCTGCAACCAGACTCATT GAATCAAATGCTTTGAATATCTGCCAGGATAGCAACAATTTTACTGCCACCTACTTCAGCGTCCGCTTCACGCCC GAGAATCGTTCCTTGGTTCTGAGTTTCGATGGCGTGGCCGCCATCTCCGGCAAAGTTACTGCCGATCTCTCGGTC GACGTCTATGGCTACCAGTTGACTGGTGAGACGTTGGACCCGTGTAAAATGAATATAGAGGGTCTCTGTCCGATG AGCGCCGGTGCCATTAATGTCCAGAACGCCCCGGTCACAATTCCGGAAGATGTGGTGCGCCGGATCCCGGGTCTG TAGTATCCCGCGCAATGATTGTCTAATAGTATTAACAATCTTCTAGGTATCGCATACACTGTGCCAGACCTTGAT GCCACCGTTCGGGTTTACATCAACTCCACGGATACCGGCACCAGTATTACATGTCTCGAAGCGACCTTGTCGAAT GGAAAAACAGTCTACCAGAAAGGAGTCGGATGGACGACCGCGGTGATCTCCGGCGTCGGGCTTATCGCTTCAGCT GTTGCAGCTGGTCTGGGCAACTCGAACACTGCGGCCCATGTCGCCGCTAACGTGCTGGCCTTTTTCAGCTTCATG CAATCACAGGCCATGTTTGGGATGATCTCGGTCCACATGCCGCCGATAGTGGAAGCATGGACCCAGAACATGCAA TGGAGCATGGGGATCATCCATGTTAAGTTCTTGGATACCATTTGTACCTGGTACCAAAGGGCAACTGGCGGTACG CCGTCGACTGTCTTGTCCGAGCTCTCGACTACGTCTGTTGAAGTTCTGAAACGAAAGCGATCTTTTGATGGCGTC ACCAATGTGTTCAAACGACAATATGCCCAGTCGGAGACTGCCACTACCGGCACCACAGTGGTGCGGGGAATCGAT CGTGTGGGGTTCAGGGCCGGCATTGAGGGCACCAATATCTTCCTCACCGGCTTCATCTTCTTCGTCTTTTTCGTC GCCGTGGTGATGATCATCGTCGCGTTGCTCAAGGTGGGAAGCCACTTTCTGGCGAAGAAAGGGAAGACCAAGACC GACAAGTTTGGCGACTTTCATGTGTCGAAAGGTATCCTCTATCGGCTCATTTTCATCGGATTTCCGCAGATGTGC GTCCTTTGTCTGTGGGAATTTACGCAGCATGATTCGGCAGCCGAAGTCGTTTTGGCGGTGATCATGTTGGTTTCC ATGATCTGCACGCTGGGCTGGGCTGCCTTCCGAGTCATCATTCTCGCACGGAGGTCGGTAGCGATGCATCGCAAC CCGGCCTATATCCTCTACTCAGACGAGGCATGTCTGAACAAGCTGGGGTTTTTGTATGTGCATTACCGAGCGACC GCCTACTACTTCCTCGTGTTCGCACTACTGTATATCTTCGTCAAGGCGATGTTCATCAGTCTGAGCCAGCCGGCC CCGGTGGTGCAGACGGTGGCCATGGTGATTATTGAGACCTTGGCGCTTATTGGGATCAGTATCGTGCGACCGTGG ATGGACAAAAAAACCAATGGCTACAATATCGCCATCGCATCCATCAACTTTTTAAATTCCATCTTGTTGCTTTTC TTTTCCAACGTCTTCGACCAGCCCGGCATCGTGACCGGTGTGATGGGGGTCATTTTCTTTGTGTACAATGCCGCC TTTGCGCTCATTCTGCTCCTCCTCGTTCTTTACTCCGCCGTTAACGCTATCTTCTCGAAGAATCCGGACATGCGC TATCGGCCGATGCGGGACGACCGGGGATCCTTTGCCAAGTCGGGGAGCCAGTTGATCACGGAGCTGGATGCGCTC GGCACGACTGCTCGGGGTGAGGGCACGCCGGAGATGTGGAACAAAGGCAGTTTGATCGACGACACTGGGTCTGTT GCTAGTGAGGGACTGCATCGAAGTCACCAAGATCTGGCCCGCGACACTGCTCCTGGTCGTGAGATGTCTGAGACG CCCGTCAGCCAGGCGAATTTGTTTCCCGTCAGTCGAGGGAGCAGTCCTGTTCATCGAGTAGCGTCCATGAATGCC GCAGGTGTGCGTCGCAGTCTGTTGAGTGACAGCGATACGGCATCGGCGACTCACCCGCATGCAAACCTATAG |