© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g2979.t1 |
| Gene name | |
| Location | scaffold_013:131193..132539 |
| Strand | + |
| Gene length (bp) | 1346 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02826 | 2-Hacid_dh_C | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 1.9E-59 | 128 | 302 |
| PF00389 | 2-Hacid_dh | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | 6.4E-11 | 66 | 333 |
| PF03446 | NAD_binding_2 | NAD binding domain of 6-phosphogluconate dehydrogenase | 4.2E-05 | 166 | 267 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051287 | NAD binding | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0050661 | NADP binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g2979.t1 MGSSDPKPKVLLLGDIVHAHTTWSSLSDIADLIRPTATNRAEFIQECQSGALDGVIAAYRTFDSVRITGLIDEEL VNALPKSLVYLAHCGAGYDQIDPHACSARTPTPIRISNVPTAVDDATADVNMFLIIGALRNFNAGMHALREGKWR GQPAPRLGHDPQGKVLGILGMGGIGRNLKKKAEAFGMKVIYHNRRKLSEELADGARYVSFDELLAESDVVSLNLP LNKHTRHIISTAEFAKMKDGVVVVNTARGAVMDEEALVQALDSGKVYSAGLDVFEEEPTVHPGLVRNPNVLLVPH MGTWTVETQTGMEEWAIENVRMALETGKLKSPIPEQADL* |
| Coding | >Ani_SJS100_1|g2979.t1 ATGGGCTCCAGCGACCCCAAACCCAAGGTCCTCCTCCTAGGAGACATCGTCCACGCCCACACAACCTGGTCCTCC CTCTCCGACATCGCCGACCTAATCCGCCCGACAGCCACCAACCGCGCCGAATTCATCCAAGAATGCCAATCCGGC GCCCTGGACGGCGTCATCGCCGCATACCGCACCTTCGACAGCGTGAGAATCACGGGTCTAATTGACGAGGAACTC GTCAACGCGCTGCCTAAGTCGTTAGTTTATTTGGCACATTGCGGAGCCGGCTACGACCAAATCGACCCGCACGCA TGCAGCGCGCGCACCCCGACTCCCATCCGGATCTCCAACGTCCCAACAGCAGTGGACGACGCGACCGCCGACGTC AACATGTTCCTGATCATCGGGGCGTTGAGGAACTTCAACGCGGGCATGCACGCCCTCCGCGAGGGGAAGTGGCGG GGTCAGCCTGCGCCGCGACTGGGACATGATCCGCAGGGTAAGGTGCTGGGGATTCTGGGGATGGGAGGCATAGGT AGGAATTTGAAGAAGAAGGCGGAGGCGTTTGGAATGAAGGTGATTTACCATAATCGGAGAAAGCTGAGTGAGGAG TTGGCGGATGGGGCTAGGTATGTGAGTTTTGATGAGTTGTTGGCGGAAAGTGATGTGGTTAGTTTGAATTTGCCA TTGAATAAACATACCCGTCACATTATCAGCACGGCCGAGTTCGCCAAGATGAAGGATGGTGTGGTGGTTGTTAAC ACTGCTCGCGGTGCTGTTATGGATGAGGAGGCGCTCGTGCAGGCTCTTGATAGTGGAAAGGTGTATTCCGCTGGA TTGGATGTCTTTGAGGAGGAGCCGACGGTGCATCCGGGATTGGTCCGCAATCCGAATGTCTTGCTGGTGCCGCAT ATGGGTACTTGGACTGTTGAGACACAAACTGGCATGGAGGAGTGGGCGATTGAGAATGTCCGCATGGCGCTGGAG ACGGGCAAGTTGAAGAGTCCGATCCCAGAGCAGGCGGATCTATGA |
| Transcript | >Ani_SJS100_1|g2979.t1 ATGGGCTCCAGCGACCCCAAACCCAAGGTCCTCCTCCTAGGAGACATCGTCCACGCCCACACAACCTGGTCCTCC CTCTCCGACATCGCCGACCTAATCCGCCCGACAGCCACCAACCGCGCCGAATTCATCCAAGAATGCCAATCCGGC GCCCTGGACGGCGTCATCGCCGCATACCGCACCTTCGACAGCGTGAGAATCACGGGTCTAATTGACGAGGAACTC GTCAACGCGCTGCCTAAGTCGTTAGTTTATTTGGCACATTGCGGAGCCGGCTACGACCAAATCGACCCGCACGCA TGCAGCGCGCGCACCCCGACTCCCATCCGGATCTCCAACGTCCCAACAGCAGTGGACGACGCGACCGCCGACGTC AACATGTTCCTGATCATCGGGGCGTTGAGGAACTTCAACGCGGGCATGCACGCCCTCCGCGAGGGGAAGTGGCGG GGTCAGCCTGCGCCGCGACTGGGACATGATCCGCAGGGTAAGGTGCTGGGGATTCTGGGGATGGGAGGCATAGGT AGGAATTTGAAGAAGAAGGCGGAGGCGTTTGGAATGAAGGTGATTTACCATAATCGGAGAAAGCTGAGTGAGGAG TTGGCGGATGGGGCTAGGTATGTGAGTTTTGATGAGTTGTTGGCGGAAAGTGATGTGGTTAGTTTGAATTTGCCA TTGAATAAACATACCCGTCACATTATCAGCACGGCCGAGTTCGCCAAGATGAAGGATGGTGTGGTGGTTGTTAAC ACTGCTCGCGGTGCTGTTATGGATGAGGAGGCGCTCGTGCAGGCTCTTGATAGTGGAAAGGTGTATTCCGCTGGA TTGGATGTCTTTGAGGAGGAGCCGACGGTGCATCCGGGATTGGTCCGCAATCCGAATGTCTTGCTGGTGCCGCAT ATGGGTACTTGGACTGTTGAGACACAAACTGGCATGGAGGAGTGGGCGATTGAGAATGTCCGCATGGCGCTGGAG ACGGGCAAGTTGAAGAGTCCGATCCCAGAGCAGGCGGATCTATGA |
| Gene | >Ani_SJS100_1|g2979.t1 ATGGGCTCCAGCGACCCCAAACCCAAGGTCCTCCTCCTAGGAGACATCGTCCAGTACGTCTATTGCTCATCAATC ACATCATCATCATCATCATCATTCCCCGCACCACAACACTACCCCTCCAACCACCAATACTAACAAGAGTAACAA CAACAGCGCCCACACAACCTGGTCCTCCCTCTCCGACATCGCCGACCTAATCCGCCCGACAGCCACCAACCGCGC CGAATTCATCCAAGAATGCCAATCCGGCGCCCTGGACGGCGTCATCGCCGCATACCGCACCTTCGACAGCGTGAG AATCACGGGTCTAATTGACGAGGAACTCGTCAACGCGCTGCCTAAGTCGTTAGTTTATTTGGCACATTGCGGTAA GCTCCACCCCTACATTTCCATACAAACCTCCAGACAACAAAACAAATAATGATTGATCAATGCTAATGGCTTAAA ATATGCAGGAGCCGGCTACGACCAAATCGACCCGCACGCATGCAGCGCGCGCACCCCGACTCCCATCCGGATCTC CAACGTCCCAACAGCAGTGGACGACGCGACCGCCGACGTCAACATGTTCCTGATCATCGGGGCGTTGAGGAACTT CAACGCGGGCATGCACGCCCTCCGCGAGGGGAAGTGGCGGGGTCAGCCTGCGCCGCGACTGGGACATGATCCGCA GGGTAAGGTGCTGGGGATTCTGGGGATGGGAGGCATAGGTAGGAATTTGAAGAAGAAGGCGGAGGCGTTTGGAAT GAAGGTGATTTACCATAATCGGAGAAAGCTGAGTGAGGAGTTGGCGGATGGGGCTAGGTATGTGAGTTTTGATGA GTTGTTGGCGGAAAGTGATGTGGTTAGTTTGAATTTGCCATTGAATGTGAGTATTCCTATCCCTATTACTATCAT TCCTGTTGGTTTGTCTGGGTTGGGTTGGCGTGTGCTGATTATGGTAGAAACATACCCGTCACATTATCAGCACGG CCGAGTTCGCCAAGATGAAGGATGGTGTGGTGGTTGTTAACACTGCTCGCGGTGCTGTTATGGATGAGGAGGCGC TCGTGCAGGCTCTTGATAGTGGAAAGGTGTATTCCGCTGGATTGGATGTCTTTGAGGAGGAGCCGACGGTGCATC CGGGATTGGTCCGCAATCCGAATGTCTTGCTGGTGCCGCATATGGGTACTTGGACTGTTGAGGTGAGTGTCTCTA CGTAGTTTTGATTATGGTGGTCGGGCTGAGTACTGATACGGCTATAGACACAAACTGGCATGGAGGAGTGGGCGA TTGAGAATGTCCGCATGGCGCTGGAGACGGGCAAGTTGAAGAGTCCGATCCCAGAGCAGGCGGATCTATGA |