© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g2900.t1 |
| Gene name | |
| Location | scaffold_012:455406..457193 |
| Strand | + |
| Gene length (bp) | 1787 |
| Transcript length (bp) | 1560 |
| Coding sequence length (bp) | 1560 |
| Protein length (aa) | 520 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 5.0E-50 | 39 | 485 |
| PF00324 | AA_permease | Amino acid permease | 7.1E-19 | 63 | 496 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 38 | 60 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 160 | 182 | 22 |
| 5 | 189 | 211 | 22 |
| 6 | 277 | 299 | 22 |
| 7 | 329 | 351 | 22 |
| 8 | 378 | 400 | 22 |
| 9 | 407 | 429 | 22 |
| 10 | 444 | 466 | 22 |
| 11 | 473 | 495 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g2900.t1 MAAEKEVEKVGTAEAGDDSTSIEVVNASGHRQEVERNFSLLSICAVAVTTGNTWIAQGGSVTTALSNGGPSGVIY EFIAVSVCYWLVAASIAELASGMPSASGVYHWASITAGKYGRVCGFFAGFWNSLAWILGAASMSAILGQQTVSMY ALMHPGFVPQAWHIFVSFIICTWLCCCIVLFMNRFLPHIGNLGMFFILAGVLITIIVCAVMPHVKGTGYATGKDV WSSWENDTGYSSQGFVFVAGMLNGAYSVGTPDCSSHLAEEIPRPSRNIPKAVLAQMGVGFITGVLYMIALFYSIT DLNAVINSVYGFPLAEIYRQATGSRGGAIGLLIVAFIPTVITCAGCYITAGRTLWTISRDGATPFSRWLGHINTR MHNPFNATLVCGGIVTILACIYVGSTTAFNAFVGCFVQLSSLSYFAAIFPHVLTRRSSFTPGHFWMGRIGYLINI LACIYILAFVVIFCFPYALPTDAASMNYASLMTGGLTIFVTVWWLFRMNTYEGPKSIPMTDKVIVADAD* |
| Coding | >Ani_SJS100_1|g2900.t1 ATGGCCGCCGAAAAGGAAGTAGAGAAAGTGGGAACAGCTGAGGCTGGGGATGATTCGACTTCGATTGAAGTGGTC AACGCCTCAGGTCACCGTCAGGAAGTTGAACGGAACTTCAGTCTACTGAGCATTTGTGCCGTTGCTGTTACGACT GGAAATACATGGATTGCTCAAGGTGGCAGTGTGACAACTGCACTGAGCAATGGAGGACCATCAGGTGTGATTTAC GAATTCATTGCCGTTTCGGTTTGTTACTGGCTTGTTGCAGCATCGATTGCTGAACTGGCATCTGGAATGCCTTCT GCTAGTGGAGTCTATCACTGGGCTTCTATCACAGCAGGAAAATATGGTCGTGTTTGTGGTTTCTTCGCTGGTTTT TGGAACTCCCTTGCCTGGATTCTCGGTGCTGCCTCTATGTCCGCTATTCTAGGGCAGCAGACTGTCTCCATGTAT GCCCTCATGCATCCAGGCTTCGTCCCTCAGGCATGGCATATTTTTGTGAGCTTCATCATCTGCACATGGCTTTGT TGCTGCATCGTCCTCTTCATGAACCGGTTTCTCCCGCATATCGGTAATCTTGGAATGTTCTTCATCTTGGCCGGT GTGTTGATCACCATCATCGTGTGTGCCGTCATGCCCCATGTTAAGGGCACTGGCTATGCCACAGGCAAAGATGTC TGGAGCAGTTGGGAGAACGACACCGGATATTCTAGTCAGGGCTTTGTCTTTGTTGCCGGTATGCTCAACGGAGCC TACAGTGTGGGCACCCCCGATTGCTCGTCACATCTTGCGGAGGAAATTCCTAGGCCAAGCCGTAACATTCCCAAG GCTGTCCTGGCTCAAATGGGCGTCGGCTTCATCACCGGTGTCCTTTACATGATTGCCCTGTTCTATTCGATCACC GATCTCAACGCAGTCATCAACAGCGTCTACGGATTCCCTCTCGCCGAGATTTACCGTCAAGCAACAGGATCTAGG GGTGGTGCAATCGGTCTGCTTATCGTGGCTTTCATACCTACGGTCATCACTTGCGCTGGTTGTTACATCACCGCT GGTCGCACTTTGTGGACTATCTCTCGTGACGGAGCAACTCCTTTCTCTCGCTGGCTCGGACATATCAACACACGG ATGCACAACCCTTTCAATGCCACACTGGTATGCGGTGGGATTGTCACGATTCTTGCTTGCATCTACGTCGGATCC ACCACTGCCTTTAACGCTTTCGTTGGCTGTTTCGTGCAGCTATCCAGTCTTTCGTATTTCGCCGCCATCTTTCCG CATGTGCTTACTCGCCGGTCCTCGTTCACACCCGGTCACTTCTGGATGGGCCGTATTGGATATCTAATCAATATC TTGGCATGCATCTACATTCTCGCCTTTGTTGTGATCTTCTGTTTCCCTTACGCCTTGCCCACCGATGCCGCTTCT ATGAACTACGCCAGTCTGATGACTGGAGGCTTGACGATCTTCGTGACTGTCTGGTGGCTTTTCCGCATGAACACC TATGAGGGACCTAAGTCTATCCCTATGACCGATAAGGTGATTGTGGCCGACGCGGACTAA |
| Transcript | >Ani_SJS100_1|g2900.t1 ATGGCCGCCGAAAAGGAAGTAGAGAAAGTGGGAACAGCTGAGGCTGGGGATGATTCGACTTCGATTGAAGTGGTC AACGCCTCAGGTCACCGTCAGGAAGTTGAACGGAACTTCAGTCTACTGAGCATTTGTGCCGTTGCTGTTACGACT GGAAATACATGGATTGCTCAAGGTGGCAGTGTGACAACTGCACTGAGCAATGGAGGACCATCAGGTGTGATTTAC GAATTCATTGCCGTTTCGGTTTGTTACTGGCTTGTTGCAGCATCGATTGCTGAACTGGCATCTGGAATGCCTTCT GCTAGTGGAGTCTATCACTGGGCTTCTATCACAGCAGGAAAATATGGTCGTGTTTGTGGTTTCTTCGCTGGTTTT TGGAACTCCCTTGCCTGGATTCTCGGTGCTGCCTCTATGTCCGCTATTCTAGGGCAGCAGACTGTCTCCATGTAT GCCCTCATGCATCCAGGCTTCGTCCCTCAGGCATGGCATATTTTTGTGAGCTTCATCATCTGCACATGGCTTTGT TGCTGCATCGTCCTCTTCATGAACCGGTTTCTCCCGCATATCGGTAATCTTGGAATGTTCTTCATCTTGGCCGGT GTGTTGATCACCATCATCGTGTGTGCCGTCATGCCCCATGTTAAGGGCACTGGCTATGCCACAGGCAAAGATGTC TGGAGCAGTTGGGAGAACGACACCGGATATTCTAGTCAGGGCTTTGTCTTTGTTGCCGGTATGCTCAACGGAGCC TACAGTGTGGGCACCCCCGATTGCTCGTCACATCTTGCGGAGGAAATTCCTAGGCCAAGCCGTAACATTCCCAAG GCTGTCCTGGCTCAAATGGGCGTCGGCTTCATCACCGGTGTCCTTTACATGATTGCCCTGTTCTATTCGATCACC GATCTCAACGCAGTCATCAACAGCGTCTACGGATTCCCTCTCGCCGAGATTTACCGTCAAGCAACAGGATCTAGG GGTGGTGCAATCGGTCTGCTTATCGTGGCTTTCATACCTACGGTCATCACTTGCGCTGGTTGTTACATCACCGCT GGTCGCACTTTGTGGACTATCTCTCGTGACGGAGCAACTCCTTTCTCTCGCTGGCTCGGACATATCAACACACGG ATGCACAACCCTTTCAATGCCACACTGGTATGCGGTGGGATTGTCACGATTCTTGCTTGCATCTACGTCGGATCC ACCACTGCCTTTAACGCTTTCGTTGGCTGTTTCGTGCAGCTATCCAGTCTTTCGTATTTCGCCGCCATCTTTCCG CATGTGCTTACTCGCCGGTCCTCGTTCACACCCGGTCACTTCTGGATGGGCCGTATTGGATATCTAATCAATATC TTGGCATGCATCTACATTCTCGCCTTTGTTGTGATCTTCTGTTTCCCTTACGCCTTGCCCACCGATGCCGCTTCT ATGAACTACGCCAGTCTGATGACTGGAGGCTTGACGATCTTCGTGACTGTCTGGTGGCTTTTCCGCATGAACACC TATGAGGGACCTAAGTCTATCCCTATGACCGATAAGGTGATTGTGGCCGACGCGGACTAA |
| Gene | >Ani_SJS100_1|g2900.t1 ATGGCCGCCGAAAAGGAAGTAGAGAAAGTGGGAACAGCTGAGGCTGGGGATGATTCGACTTCGATTGAAGTGGTC AACGCCTCAGGTCACCGTCAGGAAGTTGAACGGAACTTCAGTCTACTGAGCATTTGTGCCGTTGCTGTTACGACT GGAAATACATGGATTGCTCAAGGTGGCAGTGTGGTATGCTATGCTAGCCTTGACACATTATACTTACGGAAGAGT AAAGCAACTGACAGTGTCTTGTTAGACAACTGCACTGAGCAATGGAGGACCATCAGGTGTGATTTACGAATTGTA TGACGCCACTCAACCCTAGAGGAAGGTTCACGCCGTCGCTAATCGTGATTATAGCATTGCCGTTTCGGTTTGTTA CTGGCTTGTTGCAGCATCGATTGCTGAACTGGCATCTGGAATGCCTTCTGCTAGTGGAGGTATGTTTTTCTACCA ATACCCATTTCTGGTCGGTTGCTGATAACAGCTACCAGTCTATCACTGGGCTTCTATCACAGCAGGAAAATATGG TCGTGTTTGTGGTTTCTTCGCTGGTTTTTGGAACTCCCTTGCCTGGATTCTCGGTGCTGCCTCTATGTCCGCTAT TCTAGGGCAGCAGACTGTCTCCATGTATGCCCTCATGCATCCAGGCTTCGTCCCTCAGGCATGGCATATTTTTGT GAGCTTCATCATCTGCACATGGCTTTGTTGCTGCATCGTCCTCTTCATGAACCGGTTTCTCCCGCATATCGGTAA TCTTGGAATGTTCTTCATCTTGGCCGGTGTGTTGATCACCATCATCGTGTGTGCCGTCATGCCCCATGTTAAGGG CACTGGCTATGCCACAGGCAAAGATGTCTGGAGCAGTTGGGAGAACGACACCGGATATTCTAGTCAGGGCTTTGT CTTTGTTGCCGGTATGCTCAACGGAGCCTACAGTGTGGGCACCCCCGATTGCTCGTCACATCTTGCGGAGGAAAT TCCTAGGTAAAGTTACCATCGTAATTCAGATGCTTGATATACTAATGATGAACAGGCCAAGCCGTAACATTCCCA AGGCTGTCCTGGCTCAAATGGGCGTCGGCTTCATCACCGGTGTCCTTTACATGATTGCCCTGTTCTATTCGATCA CCGATCTCAACGCAGTCATCAACAGCGTCTACGGATTCCCTCTCGCCGAGATTTACCGTCAAGCAACAGGATCTA GGGGTGGTGCAATCGGTCTGCTTATCGTGGCTTTCATACCTACGGTCATCACTTGCGCTGGTTGTTACATCACCG CTGGTCGCACTTTGTGGACTATCTCTCGTGACGGAGCAACTCCTTTCTCTCGCTGGCTCGGACATATCAACACAC GGATGCACAACCCTTTCAATGCCACACTGGTATGCGGTGGGATTGTCACGATTCTTGCTTGCATCTACGTCGGAT CCACCACTGCCTTTAACGCTTTCGTTGGCTGTTTCGTGCAGCTATCCAGTCTTTCGTATTTCGCCGCCATCTTTC CGCATGTGCTTACTCGCCGGTCCTCGTTCACACCCGGTCACTTCTGGATGGGCCGTATTGGATATCTAATCAATA TCTTGGCATGCATCTACATTCTCGCCTTTGTTGTGATCTTCTGTTTCCCTTACGCCTTGCCCACCGATGCCGCTT CTATGAACTACGCCAGTCTGATGACTGGAGGCTTGACGATCTTCGTGACTGTCTGGTGGCTTTTCCGCATGAACA CCTATGAGGGACCTAAGTCTATCCCTATGACCGATAAGGTGATTGTGGCCGACGCGGACTAA |