Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g2746.t1
Gene name
Locationscaffold_011:516760..517318
Strand+
Gene length (bp)558
Transcript length (bp)558
Coding sequence length (bp)558
Protein length (aa) 186

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10273 WGG Pre-rRNA-processing protein TSR2 9.3E-30 15 91

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 31 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g2746.t1
MTTQPPQTATQYLDLGITLAINAWPALTLAVQSNWGGPTSSDKRDWLCGAISEMIQERPETDAEDLEDVLIQVMN
DEFDVVVDDESAGMVAVQIMEMKGQTEKGEFGAIQEMWEKWQSKKGASEIAGFQRGEDQDDDDDDDSEDEDGDME
MDDAPAPALVRAPREKVEPEVDEDGFTTVVSKKRR*
Coding >Ani_SJS100_1|g2746.t1
ATGACCACTCAACCCCCCCAGACAGCAACCCAGTACCTCGACCTCGGCATAACCCTCGCGATCAACGCCTGGCCG
GCCTTAACCCTTGCTGTGCAATCCAACTGGGGCGGCCCAACCTCCTCCGACAAGCGCGACTGGCTCTGCGGCGCC
ATCTCCGAAATGATACAGGAGCGCCCAGAGACCGACGCCGAGGATCTCGAGGATGTGCTTATCCAAGTGATGAAT
GATGAGTTTGACGTCGTGGTGGATGATGAGAGCGCGGGCATGGTTGCCGTGCAGATTATGGAGATGAAGGGGCAG
ACGGAGAAGGGAGAGTTCGGGGCGATTCAGGAGATGTGGGAGAAGTGGCAGAGTAAGAAGGGGGCTTCGGAAATC
GCGGGGTTCCAGAGAGGTGAGGATCAGGATGATGATGACGACGATGATAGCGAGGATGAGGACGGGGATATGGAG
ATGGATGATGCGCCTGCGCCGGCGTTGGTGAGGGCGCCGAGGGAGAAGGTTGAGCCCGAGGTTGATGAGGATGGG
TTTACGACTGTTGTTTCGAAGAAGAGGAGGTAA
Transcript >Ani_SJS100_1|g2746.t1
ATGACCACTCAACCCCCCCAGACAGCAACCCAGTACCTCGACCTCGGCATAACCCTCGCGATCAACGCCTGGCCG
GCCTTAACCCTTGCTGTGCAATCCAACTGGGGCGGCCCAACCTCCTCCGACAAGCGCGACTGGCTCTGCGGCGCC
ATCTCCGAAATGATACAGGAGCGCCCAGAGACCGACGCCGAGGATCTCGAGGATGTGCTTATCCAAGTGATGAAT
GATGAGTTTGACGTCGTGGTGGATGATGAGAGCGCGGGCATGGTTGCCGTGCAGATTATGGAGATGAAGGGGCAG
ACGGAGAAGGGAGAGTTCGGGGCGATTCAGGAGATGTGGGAGAAGTGGCAGAGTAAGAAGGGGGCTTCGGAAATC
GCGGGGTTCCAGAGAGGTGAGGATCAGGATGATGATGACGACGATGATAGCGAGGATGAGGACGGGGATATGGAG
ATGGATGATGCGCCTGCGCCGGCGTTGGTGAGGGCGCCGAGGGAGAAGGTTGAGCCCGAGGTTGATGAGGATGGG
TTTACGACTGTTGTTTCGAAGAAGAGGAGGTAA
Gene >Ani_SJS100_1|g2746.t1
ATGACCACTCAACCCCCCCAGACAGCAACCCAGTACCTCGACCTCGGCATAACCCTCGCGATCAACGCCTGGCCG
GCCTTAACCCTTGCTGTGCAATCCAACTGGGGCGGCCCAACCTCCTCCGACAAGCGCGACTGGCTCTGCGGCGCC
ATCTCCGAAATGATACAGGAGCGCCCAGAGACCGACGCCGAGGATCTCGAGGATGTGCTTATCCAAGTGATGAAT
GATGAGTTTGACGTCGTGGTGGATGATGAGAGCGCGGGCATGGTTGCCGTGCAGATTATGGAGATGAAGGGGCAG
ACGGAGAAGGGAGAGTTCGGGGCGATTCAGGAGATGTGGGAGAAGTGGCAGAGTAAGAAGGGGGCTTCGGAAATC
GCGGGGTTCCAGAGAGGTGAGGATCAGGATGATGATGACGACGATGATAGCGAGGATGAGGACGGGGATATGGAG
ATGGATGATGCGCCTGCGCCGGCGTTGGTGAGGGCGCCGAGGGAGAAGGTTGAGCCCGAGGTTGATGAGGATGGG
TTTACGACTGTTGTTTCGAAGAAGAGGAGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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