Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g2711.t1
Gene name
Locationscaffold_011:390343..391669
Strand-
Gene length (bp)1326
Transcript length (bp)1122
Coding sequence length (bp)1122
Protein length (aa) 374

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00544 Pectate_lyase_4 Pectate lyase 3.7E-09 110 290

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g2711.t1
MKVPFLQLLCLNAALASANVVKGAAQGFAAGVTGGGDITPSYPKTNEELVSLLESDEPQVVVLTKTFEFIGTEGT
TTENGCAPWGTGKSCQLAINSNGWCGKNPVVTITYDNAAKNGIHIKSNKTLVGEGDKGVLSGKGLYFEGGVSNII
VQNIKITNLNPGFVWGGDAFTFFGADLIWIDHCETSLTGRQHYVTGFHPNTRMTWSNNFLNGVTTHSAGCDDHHY
WTMELVGPGDQITFQNNYVYHTTGRGPALSGTTLFHAVNSVWSSIPGHAIEGGDKGRGLFEGCFFEDVVEIAPAK
PENQLFSASEANAASCKSALGRACQANSYSKSGAFGSSETGFFKDFAGLTIAPAGSATDALAYVPKNCGIGRL*
Coding >Ani_SJS100_1|g2711.t1
ATGAAGGTCCCCTTCCTCCAACTTCTCTGCCTAAATGCCGCCTTGGCTAGCGCCAATGTTGTTAAAGGCGCGGCC
CAGGGTTTCGCAGCCGGCGTGACAGGCGGCGGCGATATAACTCCCAGCTACCCCAAAACCAACGAGGAGCTTGTC
TCCCTGCTCGAGAGCGACGAACCCCAAGTCGTCGTACTCACCAAGACCTTTGAGTTCATCGGAACCGAGGGAACC
ACGACCGAGAATGGATGCGCACCCTGGGGTACTGGGAAGTCCTGCCAGCTGGCCATCAACTCCAATGGATGGTGT
GGTAAAAATCCCGTCGTAACCATCACGTATGATAACGCCGCCAAGAATGGCATTCATATCAAGTCCAACAAGACT
CTTGTTGGTGAGGGAGACAAGGGCGTGCTCAGCGGAAAGGGTCTCTACTTTGAGGGTGGTGTTTCCAATATCATC
GTGCAGAACATTAAGATTACGAACCTCAACCCTGGTTTTGTCTGGGGTGGCGACGCGTTTACTTTCTTTGGCGCT
GATCTGATCTGGATCGACCACTGCGAGACCTCCCTCACCGGACGCCAACACTACGTGACCGGCTTCCACCCCAAC
ACCCGCATGACTTGGTCCAACAACTTCCTTAACGGCGTAACCACCCACTCCGCAGGCTGCGATGATCACCACTAT
TGGACAATGGAGCTAGTTGGCCCTGGGGACCAAATTACCTTCCAGAACAACTACGTCTACCACACCACCGGCCGT
GGACCCGCTCTCTCCGGCACGACCCTCTTCCACGCAGTCAACAGCGTCTGGTCCTCCATCCCTGGACACGCCATC
GAGGGCGGTGACAAGGGCCGCGGTCTCTTCGAGGGATGCTTCTTCGAAGATGTTGTCGAGATTGCCCCCGCCAAG
CCCGAGAACCAACTCTTCAGCGCCAGCGAAGCCAACGCCGCATCTTGCAAGTCCGCCTTGGGCCGCGCTTGCCAG
GCCAATAGCTATAGCAAATCTGGTGCTTTTGGCAGCTCTGAAACTGGCTTTTTCAAGGACTTTGCCGGACTGACT
ATTGCACCGGCCGGCTCTGCGACGGATGCTCTCGCTTATGTTCCTAAGAATTGTGGTATTGGGCGTCTTTGA
Transcript >Ani_SJS100_1|g2711.t1
ATGAAGGTCCCCTTCCTCCAACTTCTCTGCCTAAATGCCGCCTTGGCTAGCGCCAATGTTGTTAAAGGCGCGGCC
CAGGGTTTCGCAGCCGGCGTGACAGGCGGCGGCGATATAACTCCCAGCTACCCCAAAACCAACGAGGAGCTTGTC
TCCCTGCTCGAGAGCGACGAACCCCAAGTCGTCGTACTCACCAAGACCTTTGAGTTCATCGGAACCGAGGGAACC
ACGACCGAGAATGGATGCGCACCCTGGGGTACTGGGAAGTCCTGCCAGCTGGCCATCAACTCCAATGGATGGTGT
GGTAAAAATCCCGTCGTAACCATCACGTATGATAACGCCGCCAAGAATGGCATTCATATCAAGTCCAACAAGACT
CTTGTTGGTGAGGGAGACAAGGGCGTGCTCAGCGGAAAGGGTCTCTACTTTGAGGGTGGTGTTTCCAATATCATC
GTGCAGAACATTAAGATTACGAACCTCAACCCTGGTTTTGTCTGGGGTGGCGACGCGTTTACTTTCTTTGGCGCT
GATCTGATCTGGATCGACCACTGCGAGACCTCCCTCACCGGACGCCAACACTACGTGACCGGCTTCCACCCCAAC
ACCCGCATGACTTGGTCCAACAACTTCCTTAACGGCGTAACCACCCACTCCGCAGGCTGCGATGATCACCACTAT
TGGACAATGGAGCTAGTTGGCCCTGGGGACCAAATTACCTTCCAGAACAACTACGTCTACCACACCACCGGCCGT
GGACCCGCTCTCTCCGGCACGACCCTCTTCCACGCAGTCAACAGCGTCTGGTCCTCCATCCCTGGACACGCCATC
GAGGGCGGTGACAAGGGCCGCGGTCTCTTCGAGGGATGCTTCTTCGAAGATGTTGTCGAGATTGCCCCCGCCAAG
CCCGAGAACCAACTCTTCAGCGCCAGCGAAGCCAACGCCGCATCTTGCAAGTCCGCCTTGGGCCGCGCTTGCCAG
GCCAATAGCTATAGCAAATCTGGTGCTTTTGGCAGCTCTGAAACTGGCTTTTTCAAGGACTTTGCCGGACTGACT
ATTGCACCGGCCGGCTCTGCGACGGATGCTCTCGCTTATGTTCCTAAGAATTGTGGTATTGGGCGTCTTTGA
Gene >Ani_SJS100_1|g2711.t1
ATGAAGGTCCCCTTCCTCCAACTTCTCTGCCTAAATGCCGCCTTGGCTAGCGCCAATGTTGTTAAAGGCGCGGCC
CAGGGTTTCGCAGCCGGCGTGACAGGCGGCGGCGATATAACTCCCAGCTACCCCAAAACCAACGAGGAGCTTGTC
TCCCTGCTCGAGAGCGACGAACCCCAAGTCGTCGTACTCACCAAGACCTTTGAGTTCATCGGAACCGAGGGAACC
ACGACCGAGAATGGATGCGCACCCTGGGGTACTGGGAAGTCCTGCCAGCTGGCCATCAACTCCAATGGATGGTGT
GGTAAAAATCCCGTCGTAACCATCACGTATGATAACGCCGCCAAGAATGGCATTCATATCAAGTCCAACAAGACT
CTTGTTGGTGAGGGAGACAAGGGCGTGCTCAGCGGAAAGGGTCTCTACTTTGAGGGTGGTGTTTCCAATATCATC
GTGCAGAACATTAAGATTACGAACCTCAACCCTGGGTATGTATCATCCCAGTAACTAGGAGTTCTCGAATGCTTT
GGGAGACACCATATGTTCTAACGTTTTTCACTACAGTTTTGTCTGGGGTGGCGACGCGTTTACTTTCTTTGGCGC
TGATCTGATCTGGATCGACCACTGCGAGGTAAGACAGAAATCTCCATCATCTGATAATCATAATTGAGTTTCTCA
CATTGACTTATGGATTAGACCTCCCTCACCGGACGCCAACACTACGTGACCGGCTTCCACCCCAACACCCGCATG
ACTTGGTCCAACAACTTCCTTAACGGCGTAACCACCCACTCCGCAGGCTGCGATGATCACCACTATTGGACAATG
GAGCTAGTTGGCCCTGGGGACCAAATTACCTTCCAGAGTACGTGTCCCATGAAAACCTAAACGAAGCATCTATTC
GACTAACATACGTGTTCACTCACAGACAACTACGTCTACCACACCACCGGCCGTGGACCCGCTCTCTCCGGCACG
ACCCTCTTCCACGCAGTCAACAGCGTCTGGTCCTCCATCCCTGGACACGCCATCGAGGGCGGTGACAAGGGCCGC
GGTCTCTTCGAGGGATGCTTCTTCGAAGATGTTGTCGAGATTGCCCCCGCCAAGCCCGAGAACCAACTCTTCAGC
GCCAGCGAAGCCAACGCCGCATCTTGCAAGTCCGCCTTGGGCCGCGCTTGCCAGGCCAATAGCTATAGCAAATCT
GGTGCTTTTGGCAGCTCTGAAACTGGCTTTTTCAAGGACTTTGCCGGACTGACTATTGCACCGGCCGGCTCTGCG
ACGGATGCTCTCGCTTATGTTCCTAAGAATTGTGGTATTGGGCGTCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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