Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g2680.t1
Gene name
Locationscaffold_011:295019..295798
Strand+
Gene length (bp)779
Transcript length (bp)708
Coding sequence length (bp)708
Protein length (aa) 236

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 5.1E-10 49 92
PF01476 LysM LysM domain 9.7E-03 123 176
PF01476 LysM LysM domain 3.4E-02 194 223

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g2680.t1
MLANPNRLFLLTTAFIGNVLSLPATVDYDVLPSSGSVLNLDVAASNITYTVQENDTIHTIAAKYNVGACDLARLN
VLADPNFLYANETLRIPARATFPDDYSCFSTNNTDATATCIYGGPHVYTILPGDTIQKIANERYNITTDSILSFT
AQTGYIAALNPGIYDVLETGQTVKIPSCDNSACTMADFTFTYGTLQDFATAYNVSVGQIMSLNLGYNHTDYIAPL
GVVYDCTLLD*
Coding >Ani_SJS100_1|g2680.t1
ATGTTAGCAAACCCCAACAGGCTGTTCCTGTTGACAACAGCATTTATTGGAAATGTCCTTTCTCTACCAGCCACA
GTAGATTATGATGTTCTTCCCAGTTCCGGCTCCGTCCTCAATCTCGACGTCGCAGCCAGCAACATCACCTACACC
GTGCAAGAGAATGACACCATTCACACCATAGCGGCCAAATACAATGTCGGCGCCTGCGACCTCGCCCGTCTAAAT
GTCCTCGCCGATCCTAACTTTCTCTACGCAAACGAGACCCTCCGGATTCCCGCCCGCGCTACCTTCCCCGACGAC
TACTCCTGCTTCAGCACGAACAACACCGACGCAACAGCCACATGCATCTACGGTGGACCCCACGTGTATACCATC
TTACCCGGGGATACGATTCAGAAGATCGCCAACGAGCGGTACAATATCACGACAGATTCGATCCTCAGCTTTACT
GCCCAGACGGGATACATTGCTGCTTTGAATCCTGGTATTTACGATGTGCTGGAGACCGGACAGACCGTGAAGATC
CCGAGTTGTGATAATTCGGCGTGTACGATGGCGGATTTTACGTTTACGTATGGCACGTTGCAGGATTTTGCCACG
GCGTACAACGTTAGTGTGGGACAGATTATGTCCTTGAACTTGGGGTATAATCATACGGATTATATTGCGCCATTG
GGGGTCGTGTATGATTGTACTTTGCTGGATTGA
Transcript >Ani_SJS100_1|g2680.t1
ATGTTAGCAAACCCCAACAGGCTGTTCCTGTTGACAACAGCATTTATTGGAAATGTCCTTTCTCTACCAGCCACA
GTAGATTATGATGTTCTTCCCAGTTCCGGCTCCGTCCTCAATCTCGACGTCGCAGCCAGCAACATCACCTACACC
GTGCAAGAGAATGACACCATTCACACCATAGCGGCCAAATACAATGTCGGCGCCTGCGACCTCGCCCGTCTAAAT
GTCCTCGCCGATCCTAACTTTCTCTACGCAAACGAGACCCTCCGGATTCCCGCCCGCGCTACCTTCCCCGACGAC
TACTCCTGCTTCAGCACGAACAACACCGACGCAACAGCCACATGCATCTACGGTGGACCCCACGTGTATACCATC
TTACCCGGGGATACGATTCAGAAGATCGCCAACGAGCGGTACAATATCACGACAGATTCGATCCTCAGCTTTACT
GCCCAGACGGGATACATTGCTGCTTTGAATCCTGGTATTTACGATGTGCTGGAGACCGGACAGACCGTGAAGATC
CCGAGTTGTGATAATTCGGCGTGTACGATGGCGGATTTTACGTTTACGTATGGCACGTTGCAGGATTTTGCCACG
GCGTACAACGTTAGTGTGGGACAGATTATGTCCTTGAACTTGGGGTATAATCATACGGATTATATTGCGCCATTG
GGGGTCGTGTATGATTGTACTTTGCTGGATTGA
Gene >Ani_SJS100_1|g2680.t1
ATGTTAGCAAACCCCAACAGGCTGTTCCTGTTGACAACAGCATTTATTGGAAATGTCCTTTCTCTACCAGCCACA
GTAGATTATGATGGTGAGCCCCTACCACACCTAAACCCCTACCACACCACCATGCCCCAAAATAACCTAACTCAA
CCCAAACAGTTCTTCCCAGTTCCGGCTCCGTCCTCAATCTCGACGTCGCAGCCAGCAACATCACCTACACCGTGC
AAGAGAATGACACCATTCACACCATAGCGGCCAAATACAATGTCGGCGCCTGCGACCTCGCCCGTCTAAATGTCC
TCGCCGATCCTAACTTTCTCTACGCAAACGAGACCCTCCGGATTCCCGCCCGCGCTACCTTCCCCGACGACTACT
CCTGCTTCAGCACGAACAACACCGACGCAACAGCCACATGCATCTACGGTGGACCCCACGTGTATACCATCTTAC
CCGGGGATACGATTCAGAAGATCGCCAACGAGCGGTACAATATCACGACAGATTCGATCCTCAGCTTTACTGCCC
AGACGGGATACATTGCTGCTTTGAATCCTGGTATTTACGATGTGCTGGAGACCGGACAGACCGTGAAGATCCCGA
GTTGTGATAATTCGGCGTGTACGATGGCGGATTTTACGTTTACGTATGGCACGTTGCAGGATTTTGCCACGGCGT
ACAACGTTAGTGTGGGACAGATTATGTCCTTGAACTTGGGGTATAATCATACGGATTATATTGCGCCATTGGGGG
TCGTGTATGATTGTACTTTGCTGGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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