Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g2488.t1
Gene name
Locationscaffold_010:286821..287929
Strand-
Gene length (bp)1108
Transcript length (bp)777
Coding sequence length (bp)777
Protein length (aa) 259

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08079 Ribosomal_L30_N Ribosomal L30 N-terminal domain 1.0E-26 23 92
PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e 1.1E-16 99 149

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g2488.t1
MHVVECFFIHCLHTVPTKEQVLVPETLLKKRKSQEQARAVAREEAEKKKAANKEKRAVIFKRAESYVKEYRDAER
EKIRLARVARKEGNFYVADEPKLVFVIRIKGINKIPPQPRKILQLLRLLQINNGTFVRLTKATQEMLTIINPYIA
YGYPNLKSVRELVYKRGYGKVDKQRVPLTDNQIIEENLGKYGIVCMEDLIHEIYTVGPNFKQANNFLWPFKLSNP
TGGFHTRKFKHFIEGGDYGNREENINGLIRQMN*
Coding >Ani_SJS100_1|g2488.t1
ATGCATGTCGTCGAGTGCTTTTTTATCCATTGCCTTCACACTGTCCCCACCAAGGAGCAGGTTCTCGTCCCCGAG
ACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCC
GCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGC
GAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAATTTCTACGTTGCTGACGAGCCCAAGCTTGTCTTC
GTTATCCGTATCAAGGGTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCGTCTGCTCCAG
ATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCC
TACGGTTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGACAAGCAGCGT
GTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATC
CACGAGATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCC
ACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATC
AACGGCCTCATCCGCCAGATGAACTAA
Transcript >Ani_SJS100_1|g2488.t1
ATGCATGTCGTCGAGTGCTTTTTTATCCATTGCCTTCACACTGTCCCCACCAAGGAGCAGGTTCTCGTCCCCGAG
ACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGAGAAGAAGAAGGCC
GCCAACAAGGAGAAGCGCGCCGTTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGC
GAGAAGATCCGCCTTGCCCGCGTTGCTCGCAAGGAGGGTAATTTCTACGTTGCTGACGAGCCCAAGCTTGTCTTC
GTTATCCGTATCAAGGGTATCAACAAGATCCCTCCCCAGCCCCGCAAGATCCTCCAGCTGCTCCGTCTGCTCCAG
ATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAGGAGATGTTGACCATCATCAACCCCTACATTGCC
TACGGTTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAAGCGCGGTTACGGAAAGGTCGACAAGCAGCGT
GTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGCAAGTACGGCATTGTCTGCATGGAGGATCTGATC
CACGAGATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCC
ACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAGGGTGGTGACTACGGTAACCGTGAGGAGAACATC
AACGGCCTCATCCGCCAGATGAACTAA
Gene >Ani_SJS100_1|g2488.t1
ATGCATGTCGTCGAGTGCTTTTTTATCCATTGCCTTCAGTATGAGAATGTGGCACTATAGCTGCAATTCTTACAC
TCGGCGAAAGTCTGTGTAATCATTACGGACAGACTGTACTGACCTTAACAGCACTGTCCCCACCAAGGAGCAGGT
TCTCGTCCCCGAGACCCTCCTGAAGAAGCGCAAGAGCCAGGAGCAGGCTCGCGCTGTCGCCCGTGAGGAGGCCGA
GAAGAAGAAGGCCGTAAGTTATACCTTTTTTTTCATATATCCTCTTCCCTCTTCCTTCTATAGTGATGACAACAA
CCACCACGCGACTAGACTACGGTCGATGCTGTCGCTTCGTTAACCATCTTTCGGGGCTGAAAATGAAGCTTCAAA
TGATTTTATTTCACGAGTCATTTGCAAAGACCATCTGCTAACAGATGAATCCAGGCCAACAAGGAGAAGCGCGCC
GTTATCTTCAAGCGTGCCGAGTCCTACGTCAAGGAGTACCGCGATGCTGAGCGCGAGAAGATCCGCCTTGCCCGC
GTTGCTCGCAAGGAGGGTAATTTCTACGTTGCTGACGAGCCCAAGCTTGTCTTCGTTATCCGTATCAAGGGGTAA
GTTAATTTAGCATGCCATATGAATGTCATGATATTAACAACTTGATAGTATCAACAAGATCCCTCCCCAGCCCCG
CAAGATCCTCCAGCTGCTCCGTCTGCTCCAGATCAACAACGGTACCTTCGTCCGTCTTACCAAGGCTACCCAGGA
GATGTTGACCATCATCAACCCCTACATTGCCTACGGTTACCCCAACCTCAAGTCCGTCCGTGAGCTCGTCTACAA
GCGCGGTTACGGAAAGGTCGACAAGCAGCGTGTTCCCCTCACCGACAACCAGATCATTGAGGAGAACCTCGGCAA
GTACGGCATTGTCTGCATGGAGGATCTGATCCACGAGATCTACACCGTTGGCCCCAACTTCAAGCAGGCCAACAA
CTTCCTGTGGCCCTTCAAGCTCTCCAACCCCACTGGTGGCTTCCACACCCGCAAGTTCAAGCACTTCATCGAGGG
TGGTGACTACGGTAACCGTGAGGAGAACATCAACGGCCTCATCCGCCAGATGAACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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