Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g2408.t1
Gene name
Locationscaffold_010:36278..36771
Strand+
Gene length (bp)493
Transcript length (bp)405
Coding sequence length (bp)405
Protein length (aa) 135

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14138 COX16 Cytochrome c oxidase assembly protein COX16 5.9E-31 37 128

GO

GO Term Description Terminal node
GO:0031966 mitochondrial membrane Yes
GO:0110165 cellular anatomical entity No
GO:0031090 organelle membrane No
GO:0005575 cellular_component No
GO:0016020 membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

Domain # Start End Length
1 36 58 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g2408.t1
MPVFQAKTFRRATTASSTLGERIGAAYRAHLTKRPFLLFGLPFIMIIVAGSFALTPAAALRYERYDRKVKQLSQE
EAINLGLKGPDGDEGIKRNPRRRIIGDEREEYYRLMAKDLDDWEQKRVQRFKGEPDGKL*
Coding >Ani_SJS100_1|g2408.t1
ATGCCGGTATTTCAGGCCAAGACGTTTCGACGCGCAACAACAGCATCGTCTACTCTCGGCGAACGAATTGGTGCA
GCTTACCGGGCTCATCTAACCAAGCGCCCATTTCTACTCTTCGGCCTTCCTTTTATTATGATAATAGTTGCCGGG
TCTTTTGCTTTAACACCCGCTGCCGCTCTGAGGTACGAGCGGTACGATCGCAAAGTTAAACAATTAAGTCAAGAG
GAAGCAATCAACCTAGGCCTCAAAGGGCCCGATGGCGACGAGGGTATTAAGCGAAATCCACGGCGACGAATCATT
GGTGATGAAAGGGAGGAGTACTATCGGCTCATGGCCAAAGATCTTGATGATTGGGAGCAAAAGAGAGTACAACGC
TTCAAAGGCGAACCCGATGGGAAACTCTGA
Transcript >Ani_SJS100_1|g2408.t1
ATGCCGGTATTTCAGGCCAAGACGTTTCGACGCGCAACAACAGCATCGTCTACTCTCGGCGAACGAATTGGTGCA
GCTTACCGGGCTCATCTAACCAAGCGCCCATTTCTACTCTTCGGCCTTCCTTTTATTATGATAATAGTTGCCGGG
TCTTTTGCTTTAACACCCGCTGCCGCTCTGAGGTACGAGCGGTACGATCGCAAAGTTAAACAATTAAGTCAAGAG
GAAGCAATCAACCTAGGCCTCAAAGGGCCCGATGGCGACGAGGGTATTAAGCGAAATCCACGGCGACGAATCATT
GGTGATGAAAGGGAGGAGTACTATCGGCTCATGGCCAAAGATCTTGATGATTGGGAGCAAAAGAGAGTACAACGC
TTCAAAGGCGAACCCGATGGGAAACTCTGA
Gene >Ani_SJS100_1|g2408.t1
ATGCCGGTATTTCAGGCCAAGACGTTTCGACGCGCAACAACAGCATCGTCTACTCTCGGCGAACGAATTGGTGCA
GCTTACCGGGCTCATCTAACCAAGCGCCCATTTCTACTCTTCGGCCTTCCTTTTATTATGATAATAGTTGCCGGG
TCTTTTGCTTTAACACCCGCTGCCGCTCTGAGGTACGAGCGGTACGATCGCAAAGTTAAACAATTAAGTCAAGAG
GAAGCAATCAACCTAGGCCTCAAAGGGCCCGATGGCGACGAGGGTATTAAGCGAAATCCACGGCGACGAATCATT
GGTGATGAAAGGGAGGAGTACTATGTCAGTATACACCCTAATCGGTCAAGCGAGGATTTGCGGAATACGGCTGGG
ATGTGGGATAGCAGCTAATCCAGTACCACTGCTACAGCGGCTCATGGCCAAAGATCTTGATGATTGGGAGCAAAA
GAGAGTACAACGCTTCAAAGGCGAACCCGATGGGAAACTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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