© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g2303.t1 |
| Gene name | |
| Location | scaffold_009:357971..358961 |
| Strand | + |
| Gene length (bp) | 990 |
| Transcript length (bp) | 792 |
| Coding sequence length (bp) | 792 |
| Protein length (aa) | 264 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00445 | Ribonuclease_T2 | Ribonuclease T2 family | 1.3E-48 | 51 | 228 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033897 | ribonuclease T2 activity | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0003674 | molecular_function | No |
| GO:0004518 | nuclease activity | No |
| GO:0004521 | endoribonuclease activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0004540 | ribonuclease activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0016849 | phosphorus-oxygen lyase activity | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0016829 | lyase activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0004519 | endonuclease activity | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g2303.t1 MSFLPSVGMLALGAMQLSSGVLATIDTCSSDSPLSCQTDNEASCCFNSPGGSLLQTQFWDYDPSDGPTDSWTIHG LWPDNCDGTYQEYCDDSREYSNITSILEAQNRTELLSYMKEYWPDYEGADEDESFWEHEWNKHGTCINTIEPSCY TDYYPQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALAAIHDGYPPYVGCEDGALSQLYYY FNVKGSAIGGTYVASERLEDSNCKDSGIKYPPKSSSSK* |
| Coding | >Ani_SJS100_1|g2303.t1 ATGTCTTTCCTTCCTTCTGTGGGCATGCTCGCCCTGGGCGCAATGCAGCTCAGCTCTGGTGTGCTGGCTACCATT GACACTTGCTCCTCCGATAGCCCTCTGAGCTGTCAGACCGACAACGAAGCTTCCTGCTGCTTCAACTCTCCTGGA GGCTCCCTTCTCCAGACTCAATTCTGGGACTATGATCCCTCCGATGGACCGACCGACTCTTGGACCATTCACGGA CTCTGGCCCGATAACTGCGATGGCACATACCAGGAGTACTGCGACGACTCTCGCGAGTACAGCAACATCACCTCC ATCCTCGAAGCGCAGAATCGCACCGAGCTCCTGTCCTACATGAAGGAATACTGGCCCGACTACGAGGGCGCTGAT GAGGATGAGAGCTTCTGGGAGCACGAATGGAACAAGCACGGAACCTGCATCAACACCATCGAGCCCAGCTGTTAC ACCGACTACTACCCTCAGGAGGAAGTTGGTGACTTTTTCCAGCAGGTCGTCGACCTCTTCAAGACCTTGGATTCC TACACCGCTCTCTCCGACGCCGGAATCACTCCCTCCGAGGATGCGACCTACAAGCTGAGCGACATTGAGGATGCT CTCGCCGCGATCCACGATGGTTACCCTCCGTATGTTGGGTGCGAGGACGGTGCTCTGTCCCAGCTCTACTACTAC TTCAACGTTAAGGGCAGCGCCATCGGCGGCACCTACGTTGCTTCTGAGAGACTTGAGGACTCCAACTGCAAGGAC TCTGGCATCAAGTACCCGCCCAAGTCCAGCTCCAGCAAATAG |
| Transcript | >Ani_SJS100_1|g2303.t1 ATGTCTTTCCTTCCTTCTGTGGGCATGCTCGCCCTGGGCGCAATGCAGCTCAGCTCTGGTGTGCTGGCTACCATT GACACTTGCTCCTCCGATAGCCCTCTGAGCTGTCAGACCGACAACGAAGCTTCCTGCTGCTTCAACTCTCCTGGA GGCTCCCTTCTCCAGACTCAATTCTGGGACTATGATCCCTCCGATGGACCGACCGACTCTTGGACCATTCACGGA CTCTGGCCCGATAACTGCGATGGCACATACCAGGAGTACTGCGACGACTCTCGCGAGTACAGCAACATCACCTCC ATCCTCGAAGCGCAGAATCGCACCGAGCTCCTGTCCTACATGAAGGAATACTGGCCCGACTACGAGGGCGCTGAT GAGGATGAGAGCTTCTGGGAGCACGAATGGAACAAGCACGGAACCTGCATCAACACCATCGAGCCCAGCTGTTAC ACCGACTACTACCCTCAGGAGGAAGTTGGTGACTTTTTCCAGCAGGTCGTCGACCTCTTCAAGACCTTGGATTCC TACACCGCTCTCTCCGACGCCGGAATCACTCCCTCCGAGGATGCGACCTACAAGCTGAGCGACATTGAGGATGCT CTCGCCGCGATCCACGATGGTTACCCTCCGTATGTTGGGTGCGAGGACGGTGCTCTGTCCCAGCTCTACTACTAC TTCAACGTTAAGGGCAGCGCCATCGGCGGCACCTACGTTGCTTCTGAGAGACTTGAGGACTCCAACTGCAAGGAC TCTGGCATCAAGTACCCGCCCAAGTCCAGCTCCAGCAAATAG |
| Gene | >Ani_SJS100_1|g2303.t1 ATGTCTTTCCTTCCTTCTGTGGGCATGCTCGCCCTGGGCGCAATGCAGCTCAGCTCTGGTGTGCTGGCTACCATT GACACTTGCTCCTCCGATAGCCCTCTGAGCTGTCAGACCGACAACGAAGCTTCCTGCTGCTTCAACTCTCCTGGA GGCTCCCTTCTCCAGACTCAATTCTGGGACTATGATCCCTCCGATGGACCGACCGACTCTTGGACCATTCACGGA CTCTGGTAGGACTGACACGTCACATTCCTATATCACCCGCTAATGAGCTTTCTAAGGCCCGATAACTGCGATGGC ACATACCAGGAGTACTGCGACGACTCTCGCGAGTACAGCAACATCACCTCCATCCTCGAAGCGCAGAATCGCACC GAGCTCCTGTCCTACATGAAGGAATACTGGCCCGACTACGAGGGCGCTGATGAGGATGAGAGCTTCTGGGAGCAC GAATGGAACAAGCACGGTATGTCTGGTCACATCTGTTTCTAGAACTGGCATATTGAACTTGCTAGGAACCTGCAT CAACACCATCGAGCCCAGCTGTTACACCGACTACTACCCTCAGGAGGAAGTTGGTGACTTTTTCCAGCAGGTCGT CGACCTCTTCAAGACCTTGGATTCCTACACCGTATGTAAACAACCCCTTGTGTATTCTATAGATATTGACAGTAG CAGGCTCTCTCCGACGCCGGAATCACTCCCTCCGAGGATGCGACCTACAAGCTGAGCGACATTGAGGATGCTCTC GCCGCGATCCACGATGGTTACCCTCCGTATGTTGGGTGCGAGGACGGTGCTCTGTCCCAGCTCTACTACTACTTC AACGTTAAGGGCAGCGCCATCGGCGGCACCTACGTTGCTTCTGAGAGACGTAAGTCACCTATAATTGGATAATAT GTCATTAACTAACCCATACTATTAGTTGAGGACTCCAACTGCAAGGACTCTGGCATCAAGTACCCGCCCAAGTCC AGCTCCAGCAAATAG |