Protein ID | Ani_SJS100_1|g2283.t1 |
Gene name | |
Location | scaffold_009:260586..263745 |
Strand | - |
Gene length (bp) | 3159 |
Transcript length (bp) | 2775 |
Coding sequence length (bp) | 2775 |
Protein length (aa) | 925 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11718 | CPSF73-100_C | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | 5.4E-84 | 580 | 887 |
PF10996 | Beta-Casp | Beta-Casp domain | 2.7E-28 | 310 | 445 |
PF00753 | Lactamase_B | Metallo-beta-lactamase superfamily | 9.7E-09 | 131 | 256 |
PF16661 | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | 6.0E-09 | 133 | 262 |
PF07521 | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | 1.4E-06 | 480 | 545 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 28 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g2283.t1 MATKRKASALNAAVDDEPADPTDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS TVDILLISQYVGQSLFCVPLVTLPTPSPLSKLGLFMAVDSIPHHISPWFPSMVADFHVDHSSALPYVLSKTNFKG RVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGA AMFLISIAGLNILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRV LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEAEASGDKS VSAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTMAKQILNEPE QIPAVMSRATTGLVRRGMAAGNEEEQKVMIPRRCTVDEVSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRL KSKLLSLNAEKTVKVKVYTPGNCEEVRIPFKKDKIAKVVGKLAQIAPPSEQDDGQLMSGVLVQNGFNLSLMAPDD LREYAGLTTTAITCKQHITLSSASMDLIKWALEGTFGAIEEVGKSQQEVVKKGEEDEMDNANGETFKEEAADEEI PMGDTQTYLVMGCVLIRYYPRTREVELEWEGNMMNDGVADAVMAVLLTVESSPASVKQSAKHKHHHHHHHHDDDH AHQIPNPHSNVGPEERFRRLLMMLQAQFGSEITAIERPRLPPNSITNGTTNKVDSDDMSTPVKEEEEEEEDEDDL TELEAAEISRLHALGIPFPGLEIKVDKHIARIWLEDLEVECANPALRDRVRVVVERAVETVASMWAEGPAPATAV AANGESKDQDSSTGLKATAIEAKA* |
Coding | >Ani_SJS100_1|g2283.t1 ATGGCCACAAAACGAAAGGCATCGGCCTTAAATGCCGCGGTGGATGATGAGCCGGCCGATCCAACGGATGAATTG GCCTTTTATTGTCTAGGAGGTGGAAATGAAGTCGGGCGATCATGTCATATAATCCAGTATAAGGGCAAAACAGTG ATGCTTGACGCCGGTATGCATCCTGCGAAAGAAGGCTTCTCGGCTCTGCCCTTCTTTGACGAATTTGACCTTAGC ACGGTAGATATTCTTCTGATCAGCCAGTATGTGGGACAGTCTCTCTTTTGCGTTCCCCTAGTCACCCTTCCTACA CCGTCGCCCCTGAGCAAGCTGGGGTTGTTCATGGCCGTGGATAGCATCCCACACCACATCTCTCCTTGGTTTCCC AGCATGGTGGCAGATTTCCATGTTGATCATTCCTCCGCGCTCCCTTATGTGCTCAGCAAGACCAATTTCAAGGGC CGTGTATTCATGACACACGCCACCAAGGCCATCTACAAATGGTTGATTCAGGACAATGTGCGTGTGAGCAGCACG GCCTCGTCTTCGGATCAACGCACCACTCTGTATACCGAGCAGGACCATTTGTCCACGCTTCCCTTGATCGAGACG ATCGACTTCAACACAACGCACACTATCAATAGCATTCGCATTACTCCCTTCCCTGCTGGCCACGTCCTTGGTGCA GCAATGTTTCTGATTTCAATTGCCGGCCTCAACATCCTCTTTACCGGTGACTATTCTCGTGAGGAAGACAGACAC CTGATCCCCGCCGAAGTTCCCAAAGGTGTAAAAATCGACGTGCTTATCACCGAGTCAACGTTCGGCATTTCGTCG AATCCCCCCCGCCTGGAACGTGAAGCGGCCCTGATGAAAGCCATTACCGGAGTCTTGAATCGCGGAGGCAGGGTC TTAATGCCGGTGTTTGCCCTGGGTCGCGCCCAGGAGTTGTTGCTCATTCTGGATGAATACTGGGAGACACATCCC GAACTTCAGAAGATACCTATCTACTATATCGGAAATACGGCTCGCAGATGTATGGTCGTGTATCAAACATATATA GGTGCAATGAACGATAACATTAAGCGACTCTTCCGTCAGCGTATGGCGGAAGCGGAAGCTAGTGGTGACAAGAGT GTCAGTGCAGGGCCCTGGGACTTCAGATTCGTCAGAAGTTTGCGCAGCCTGGAACGTTTCGATGATGTAGGAGGA TGTGTTATGCTGGCTTCACCAGGTATGCTCCAGACAGGAACCAGTAGGGAGCTTCTGGAGCGGTGGGCCCCGAAC GAACGCAATGGTGTGGTCATGACAGGCTACAGTGTTGAGGGCACAATGGCCAAGCAGATCCTGAACGAACCAGAG CAAATCCCTGCGGTCATGTCAAGAGCAACGACGGGATTGGTGAGGCGAGGCATGGCTGCCGGAAATGAAGAAGAG CAGAAGGTTATGATCCCCAGAAGATGTACAGTGGACGAGGTCAGTTTCGCCGCCCATGTAGATGGAGTTGAGAAC AGAAATTTCATTGAAGAAGTCTCTGCACCTGTCGTGATCCTTGTCCACGGTGAAAAACACCAAATGATGCGACTC AAGTCGAAGCTGCTCAGTCTCAATGCCGAGAAGACTGTGAAAGTCAAGGTCTACACGCCGGGTAATTGCGAAGAG GTTCGCATCCCTTTCAAGAAGGACAAGATCGCGAAGGTAGTTGGGAAACTGGCTCAAATCGCGCCTCCTTCGGAG CAAGACGATGGCCAGCTCATGTCCGGTGTCCTCGTCCAGAATGGCTTCAACCTATCACTAATGGCTCCTGACGAT CTCCGCGAATATGCTGGGTTGACAACCACCGCTATCACATGCAAGCAGCATATTACGTTGAGCTCTGCAAGCATG GACTTGATTAAATGGGCTCTCGAAGGTACCTTTGGTGCCATCGAAGAAGTCGGCAAATCCCAGCAGGAGGTTGTC AAGAAGGGAGAGGAAGATGAAATGGATAACGCCAACGGGGAGACGTTCAAGGAAGAAGCCGCCGATGAAGAAATC CCCATGGGAGATACGCAAACCTACCTGGTCATGGGTTGCGTGCTCATCCGATACTATCCTCGCACTCGCGAAGTC GAACTTGAATGGGAAGGGAACATGATGAACGATGGAGTTGCTGATGCAGTCATGGCGGTCCTCCTGACTGTTGAG AGCAGCCCTGCTTCAGTGAAACAATCCGCAAAGCACAAGCATCACCATCACCACCACCATCACGATGACGACCAC GCCCATCAGATCCCCAACCCCCACTCCAACGTCGGACCAGAAGAGCGTTTCCGACGTCTCCTCATGATGCTCCAA GCACAATTCGGCTCCGAGATCACAGCCATCGAGCGTCCACGCCTACCGCCCAATAGCATTACGAACGGCACCACC AACAAAGTTGACTCCGACGACATGTCGACCCCTGTGAAGGAAGAAGAAGAGGAGGAGGAAGACGAAGATGACCTA ACAGAGCTAGAAGCAGCCGAGATTTCTCGTCTCCACGCACTAGGCATTCCATTCCCGGGGCTCGAAATCAAGGTC GACAAGCACATCGCCCGGATATGGCTGGAAGATTTGGAAGTGGAGTGCGCCAACCCTGCGCTAAGGGATCGGGTT CGCGTCGTCGTCGAACGAGCCGTGGAAACTGTGGCGAGCATGTGGGCAGAGGGACCTGCGCCTGCTACAGCGGTG GCCGCAAATGGAGAAAGCAAGGATCAGGATTCTTCTACGGGATTGAAGGCGACAGCGATTGAGGCTAAAGCGTGA |
Transcript | >Ani_SJS100_1|g2283.t1 ATGGCCACAAAACGAAAGGCATCGGCCTTAAATGCCGCGGTGGATGATGAGCCGGCCGATCCAACGGATGAATTG GCCTTTTATTGTCTAGGAGGTGGAAATGAAGTCGGGCGATCATGTCATATAATCCAGTATAAGGGCAAAACAGTG ATGCTTGACGCCGGTATGCATCCTGCGAAAGAAGGCTTCTCGGCTCTGCCCTTCTTTGACGAATTTGACCTTAGC ACGGTAGATATTCTTCTGATCAGCCAGTATGTGGGACAGTCTCTCTTTTGCGTTCCCCTAGTCACCCTTCCTACA CCGTCGCCCCTGAGCAAGCTGGGGTTGTTCATGGCCGTGGATAGCATCCCACACCACATCTCTCCTTGGTTTCCC AGCATGGTGGCAGATTTCCATGTTGATCATTCCTCCGCGCTCCCTTATGTGCTCAGCAAGACCAATTTCAAGGGC CGTGTATTCATGACACACGCCACCAAGGCCATCTACAAATGGTTGATTCAGGACAATGTGCGTGTGAGCAGCACG GCCTCGTCTTCGGATCAACGCACCACTCTGTATACCGAGCAGGACCATTTGTCCACGCTTCCCTTGATCGAGACG ATCGACTTCAACACAACGCACACTATCAATAGCATTCGCATTACTCCCTTCCCTGCTGGCCACGTCCTTGGTGCA GCAATGTTTCTGATTTCAATTGCCGGCCTCAACATCCTCTTTACCGGTGACTATTCTCGTGAGGAAGACAGACAC CTGATCCCCGCCGAAGTTCCCAAAGGTGTAAAAATCGACGTGCTTATCACCGAGTCAACGTTCGGCATTTCGTCG AATCCCCCCCGCCTGGAACGTGAAGCGGCCCTGATGAAAGCCATTACCGGAGTCTTGAATCGCGGAGGCAGGGTC TTAATGCCGGTGTTTGCCCTGGGTCGCGCCCAGGAGTTGTTGCTCATTCTGGATGAATACTGGGAGACACATCCC GAACTTCAGAAGATACCTATCTACTATATCGGAAATACGGCTCGCAGATGTATGGTCGTGTATCAAACATATATA GGTGCAATGAACGATAACATTAAGCGACTCTTCCGTCAGCGTATGGCGGAAGCGGAAGCTAGTGGTGACAAGAGT GTCAGTGCAGGGCCCTGGGACTTCAGATTCGTCAGAAGTTTGCGCAGCCTGGAACGTTTCGATGATGTAGGAGGA TGTGTTATGCTGGCTTCACCAGGTATGCTCCAGACAGGAACCAGTAGGGAGCTTCTGGAGCGGTGGGCCCCGAAC GAACGCAATGGTGTGGTCATGACAGGCTACAGTGTTGAGGGCACAATGGCCAAGCAGATCCTGAACGAACCAGAG CAAATCCCTGCGGTCATGTCAAGAGCAACGACGGGATTGGTGAGGCGAGGCATGGCTGCCGGAAATGAAGAAGAG CAGAAGGTTATGATCCCCAGAAGATGTACAGTGGACGAGGTCAGTTTCGCCGCCCATGTAGATGGAGTTGAGAAC AGAAATTTCATTGAAGAAGTCTCTGCACCTGTCGTGATCCTTGTCCACGGTGAAAAACACCAAATGATGCGACTC AAGTCGAAGCTGCTCAGTCTCAATGCCGAGAAGACTGTGAAAGTCAAGGTCTACACGCCGGGTAATTGCGAAGAG GTTCGCATCCCTTTCAAGAAGGACAAGATCGCGAAGGTAGTTGGGAAACTGGCTCAAATCGCGCCTCCTTCGGAG CAAGACGATGGCCAGCTCATGTCCGGTGTCCTCGTCCAGAATGGCTTCAACCTATCACTAATGGCTCCTGACGAT CTCCGCGAATATGCTGGGTTGACAACCACCGCTATCACATGCAAGCAGCATATTACGTTGAGCTCTGCAAGCATG GACTTGATTAAATGGGCTCTCGAAGGTACCTTTGGTGCCATCGAAGAAGTCGGCAAATCCCAGCAGGAGGTTGTC AAGAAGGGAGAGGAAGATGAAATGGATAACGCCAACGGGGAGACGTTCAAGGAAGAAGCCGCCGATGAAGAAATC CCCATGGGAGATACGCAAACCTACCTGGTCATGGGTTGCGTGCTCATCCGATACTATCCTCGCACTCGCGAAGTC GAACTTGAATGGGAAGGGAACATGATGAACGATGGAGTTGCTGATGCAGTCATGGCGGTCCTCCTGACTGTTGAG AGCAGCCCTGCTTCAGTGAAACAATCCGCAAAGCACAAGCATCACCATCACCACCACCATCACGATGACGACCAC GCCCATCAGATCCCCAACCCCCACTCCAACGTCGGACCAGAAGAGCGTTTCCGACGTCTCCTCATGATGCTCCAA GCACAATTCGGCTCCGAGATCACAGCCATCGAGCGTCCACGCCTACCGCCCAATAGCATTACGAACGGCACCACC AACAAAGTTGACTCCGACGACATGTCGACCCCTGTGAAGGAAGAAGAAGAGGAGGAGGAAGACGAAGATGACCTA ACAGAGCTAGAAGCAGCCGAGATTTCTCGTCTCCACGCACTAGGCATTCCATTCCCGGGGCTCGAAATCAAGGTC GACAAGCACATCGCCCGGATATGGCTGGAAGATTTGGAAGTGGAGTGCGCCAACCCTGCGCTAAGGGATCGGGTT CGCGTCGTCGTCGAACGAGCCGTGGAAACTGTGGCGAGCATGTGGGCAGAGGGACCTGCGCCTGCTACAGCGGTG GCCGCAAATGGAGAAAGCAAGGATCAGGATTCTTCTACGGGATTGAAGGCGACAGCGATTGAGGCTAAAGCGTGA |
Gene | >Ani_SJS100_1|g2283.t1 ATGGCCACAAAACGAAAGGCATCGGCCTTAAATGCCGCGGTGGATGATGAGCCGGCCGATCCAACGGATGAATTG GCCTTTTATTGTCTAGGAGGTGGAAATGAAGTCGGGCGATCATGTCATATAATCCAGTATAAGGGCAAAACAGTG ATGGTGTGTCATTCGCGACCCAATGCTGTCTTTACCGTTTACTGACTCTGGTTTCATCAGCTTGACGCCGGTATG CATCCTGCGAAAGAAGGCTTCTCGGCTCTGCCCTTCTTTGACGAATTTGACCTTAGCACGGTAGATATTCTTCTG ATCAGCCAGTATGTGGGACAGTCTCTCTTTTGCGTTCCCCTAGTCACCCTTCCTACACCGTCGCCCCTGAGCAAG CTGGGGTTGTTCATGGCCGTGGATAGCATCCCACACCACATCTCTCCTTGGTTTCCCAGCATGGTGGCAGAGTTC TTCTCTGCCGTCATAACAATTGCATCTGCTCATGTACTGAGAGACACAATACAATATATGCTAGTTATTCATCTT GGTCTTTGCGTTGTATCTCTGTATCCGTGCCTTTTAACGCAGTCTCTGCTCCACTATTGCAATTTCACTCTTGCT CGGCCATCTCAATCGGACAGTCGGCTGATAGATACACTCCTTACCTCATAGTTTCCATGTTGATCATTCCTCCGC GCTCCCTTATGTGCTCAGCAAGACCAATTTCAAGGGCCGTGTATTCATGACACACGCCACCAAGGCCATCTACAA ATGGTTGATTCAGGACAATGTGCGTGTGAGCAGCACGGCCTCGTCTTCGGATCAACGCACCACTCTGTATACCGA GCAGGACCATTTGTCCACGCTTCCCTTGATCGAGACGATCGACTTCAACACAACGCACACTATCAATAGCATTCG CATTACTCCCTTCCCTGCTGGCCACGTCCTTGGTGCAGCAATGTTTCTGATTTCAATTGCCGGCCTCAACATCCT CTTTACCGGTGACTATTCTCGTGAGGAAGACAGACACCTGATCCCCGCCGAAGTTCCCAAAGGTGTAAAAATCGA CGTGCTTATCACCGAGTCAACGTTCGGCATTTCGTCGAATCCCCCCCGCCTGGAACGTGAAGCGGCCCTGATGAA AGCCATTACCGGAGTCTTGAATCGCGGAGGCAGGGTCTTAATGCCGGTGTTTGCCCTGGGTCGCGCCCAGGAGTT GTTGCTCATTCTGGATGAATACTGGGAGACACATCCCGAACTTCAGAAGATACCTATCTACTATATCGGAAATAC GGCTCGCAGATGTATGGTCGTGTATCAAACATATATAGGTGCAATGAACGATAACATTAAGCGACTCTTCCGTCA GCGTATGGCGGAAGCGGAAGCTAGTGGTGACAAGAGTGTCAGTGCAGGGCCCTGGGACTTCAGATTCGTCAGAAG TTTGCGCAGCCTGGAACGTTTCGATGATGTAGGAGGATGTGTTATGCTGGCTTCACCAGGTATGCTCCAGACAGG AACCAGTAGGGAGCTTCTGGAGCGGTGGGCCCCGAACGAACGCAATGGTGTGGTCATGACAGGCTACAGTGTTGA GGGCACAATGGCCAAGCAGATCCTGAACGAACCAGAGCAAATCCCTGCGGTCATGTCAAGAGCAACGACGGGATT GGTGAGGCGAGGCATGGCTGCCGGAAATGAAGAAGAGCAGAAGGTTATGATCCCCAGAAGATGTACAGTGGACGA GGTCAGTTTCGCCGCCCATGTAGATGGAGTTGAGAACAGAAATTTCATTGAAGAAGTCTCTGCACCTGTCGTGGT ATGTAGCCCCCTTTTACCTCCCGTCACAATATGTTTGGGTTACTCATTCTCCTCAGATCCTTGTCCACGGTGAAA AACACCAAATGATGCGACTCAAGTCGAAGCTGCTCAGTCTCAATGCCGAGAAGACTGTGAAAGTCAAGGTCTACA CGCCGGGTAATTGCGAAGAGGTTCGCATCCCTTTCAAGAAGGACAAGATCGCGAAGGTAGTTGGGAAACTGGCTC AAATCGCGCCTCCTTCGGAGCAAGACGATGGCCAGCTCATGTCCGGTGTCCTCGTCCAGAATGGCTTCAACCTAT CACTAATGGCTCCTGACGATCTCCGCGAATATGCTGGGTTGACAACCACCGCTATCACATGCAAGCAGCATATTA CGTTGAGCTCTGCAAGCATGGACTTGATTAAATGGGCTCTCGAAGGTACCTTTGGTGCCATCGAAGAAGTCGGCA AATCCCAGCAGGAGGTTGTCAAGAAGGGAGAGGAAGATGAAATGGATAACGCCAACGGGGAGACGTTCAAGGAAG AAGCCGCCGATGAAGAAATCCCCATGGGAGATACGCAAACCTACCTGGTCATGGGTTGCGTGCTCATCCGATACT ATCCTCGCACTCGCGAAGTCGAACTTGAATGGGAAGGGAACATGATGAACGATGGAGTTGCTGATGCAGTCATGG CGGTCCTCCTGACTGTTGAGAGCAGCCCTGCTTCAGTGAAACGTAAGTGGCAACCACCTATAACAGTACCCATGA AGAACCATCCTACTAACTACGAATCATACAGAATCCGCAAAGCACAAGCATCACCATCACCACCACCATCACGAT GACGACCACGCCCATCAGATCCCCAACCCCCACTCCAACGTCGGACCAGAAGAGCGTTTCCGACGTCTCCTCATG ATGCTCCAAGCACAATTCGGCTCCGAGATCACAGCCATCGAGCGTCCACGCCTACCGCCCAATAGCATTACGAAC GGCACCACCAACAAAGTTGACTCCGACGACATGTCGACCCCTGTGAAGGAAGAAGAAGAGGAGGAGGAAGACGAA GATGACCTAACAGAGCTAGAAGCAGCCGAGATTTCTCGTCTCCACGCACTAGGCATTCCATTCCCGGGGCTCGAA ATCAAGGTCGACAAGCACATCGCCCGGATATGGCTGGAAGATTTGGAAGTGGAGTGCGCCAACCCTGCGCTAAGG GATCGGGTTCGCGTCGTCGTCGAACGAGCCGTGGAAACTGTGGCGAGCATGTGGGCAGAGGGACCTGCGCCTGCT ACAGCGGTGGCCGCAAATGGAGAAAGCAAGGATCAGGATTCTTCTACGGGATTGAAGGCGACAGCGATTGAGGCT AAAGCGTGA |