© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1960.t1 |
| Gene name | |
| Location | scaffold_007:542055..543365 |
| Strand | - |
| Gene length (bp) | 1310 |
| Transcript length (bp) | 1095 |
| Coding sequence length (bp) | 1095 |
| Protein length (aa) | 365 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01490 | Aa_trans | Transmembrane amino acid transporter protein | 3.0E-28 | 67 | 324 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 66 | 88 | 22 |
| 2 | 93 | 115 | 22 |
| 3 | 145 | 167 | 22 |
| 4 | 177 | 199 | 22 |
| 5 | 204 | 226 | 22 |
| 6 | 251 | 273 | 22 |
| 7 | 286 | 308 | 22 |
| 8 | 328 | 345 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1960.t1 MKKQLSLDNNPEDILSAESQAGELSFSEPIQDDAVFGEIREGDTNYRNVRSLVMCVKARSTDMSKVSCIGTVALM LKVQIGLGVLTIPSCFDILGIVPGIIVLLAIAVTTTWSNWMVGVFKIRHRDVYGIGDVGKMLLGRVGYELFGGAY ILYYIFTGGSALLSISIAFNALSDHGACTAIFVAVAAIIGFTFSSIQTLARISWLAWVGVSCVIIAVFIVTIGVG IQGHAPVTAGVIPEPDYKLFGNPSFVEAMTAVSTITLAYAGAPAFFNIVSEMRDPRLFTKSLAICQTIVTVIYIV VGTVVYYYCGSHVASPALGSAGPLLKKVSYGFALPGLCVSVVLFLHAPHRTDPDALDCLDRLHV* |
| Coding | >Ani_SJS100_1|g1960.t1 ATGAAGAAACAACTAAGCCTTGATAATAACCCGGAAGATATTCTATCAGCCGAGTCACAAGCCGGCGAGCTCTCC TTTTCCGAGCCAATCCAGGATGATGCTGTGTTCGGCGAGATTCGTGAAGGTGATACCAATTACCGTAATGTGAGA TCTCTGGTGATGTGTGTCAAAGCTAGATCTACTGACATGAGCAAGGTGAGCTGTATAGGAACCGTTGCCCTTATG CTGAAAGTCCAAATCGGCCTTGGCGTCCTCACAATACCCAGCTGTTTTGATATCCTTGGGATAGTGCCCGGAATT ATCGTCCTTCTTGCAATTGCAGTGACGACAACCTGGTCGAACTGGATGGTGGGCGTGTTTAAGATACGCCATCGT GATGTTTATGGAATCGGCGATGTTGGGAAGATGCTCCTTGGGCGCGTCGGATATGAGCTATTTGGCGGGGCTTAC ATCCTATACTATATCTTCACTGGTGGTTCTGCCCTCTTGAGCATCTCAATCGCCTTTAACGCGCTGTCTGATCAT GGAGCGTGCACTGCCATTTTTGTGGCTGTTGCGGCCATCATTGGATTCACATTCTCTAGTATCCAGACTCTTGCT CGTATAAGCTGGCTTGCCTGGGTAGGAGTGTCGTGCGTTATCATTGCCGTATTCATTGTAACCATTGGTGTTGGG ATCCAGGGCCATGCCCCAGTGACTGCGGGCGTTATCCCGGAACCCGACTATAAACTCTTCGGCAACCCAAGCTTT GTTGAGGCCATGACTGCCGTATCCACGATAACTTTAGCCTACGCCGGGGCTCCAGCATTCTTTAACATCGTCTCC GAAATGCGTGACCCACGCCTCTTTACTAAATCCCTAGCCATATGCCAAACTATTGTCACTGTAATCTACATCGTG GTCGGGACAGTCGTATACTATTACTGCGGATCCCATGTTGCCTCACCAGCTCTTGGCTCTGCCGGACCCTTGCTC AAGAAGGTTAGCTATGGCTTTGCCCTACCGGGGCTGTGTGTTTCTGTGGTCCTATTCCTTCACGCACCTCACCGC ACAGACCCCGACGCACTGGATTGCCTGGATCGGCTCCACGTTTAG |
| Transcript | >Ani_SJS100_1|g1960.t1 ATGAAGAAACAACTAAGCCTTGATAATAACCCGGAAGATATTCTATCAGCCGAGTCACAAGCCGGCGAGCTCTCC TTTTCCGAGCCAATCCAGGATGATGCTGTGTTCGGCGAGATTCGTGAAGGTGATACCAATTACCGTAATGTGAGA TCTCTGGTGATGTGTGTCAAAGCTAGATCTACTGACATGAGCAAGGTGAGCTGTATAGGAACCGTTGCCCTTATG CTGAAAGTCCAAATCGGCCTTGGCGTCCTCACAATACCCAGCTGTTTTGATATCCTTGGGATAGTGCCCGGAATT ATCGTCCTTCTTGCAATTGCAGTGACGACAACCTGGTCGAACTGGATGGTGGGCGTGTTTAAGATACGCCATCGT GATGTTTATGGAATCGGCGATGTTGGGAAGATGCTCCTTGGGCGCGTCGGATATGAGCTATTTGGCGGGGCTTAC ATCCTATACTATATCTTCACTGGTGGTTCTGCCCTCTTGAGCATCTCAATCGCCTTTAACGCGCTGTCTGATCAT GGAGCGTGCACTGCCATTTTTGTGGCTGTTGCGGCCATCATTGGATTCACATTCTCTAGTATCCAGACTCTTGCT CGTATAAGCTGGCTTGCCTGGGTAGGAGTGTCGTGCGTTATCATTGCCGTATTCATTGTAACCATTGGTGTTGGG ATCCAGGGCCATGCCCCAGTGACTGCGGGCGTTATCCCGGAACCCGACTATAAACTCTTCGGCAACCCAAGCTTT GTTGAGGCCATGACTGCCGTATCCACGATAACTTTAGCCTACGCCGGGGCTCCAGCATTCTTTAACATCGTCTCC GAAATGCGTGACCCACGCCTCTTTACTAAATCCCTAGCCATATGCCAAACTATTGTCACTGTAATCTACATCGTG GTCGGGACAGTCGTATACTATTACTGCGGATCCCATGTTGCCTCACCAGCTCTTGGCTCTGCCGGACCCTTGCTC AAGAAGGTTAGCTATGGCTTTGCCCTACCGGGGCTGTGTGTTTCTGTGGTCCTATTCCTTCACGCACCTCACCGC ACAGACCCCGACGCACTGGATTGCCTGGATCGGCTCCACGTTTAG |
| Gene | >Ani_SJS100_1|g1960.t1 ATGAAGAAACAACTAAGCCTTGATAATAACCCGGAAGATATTCTATCAGCCGAGTCACAAGCCGGCGAGCTCTCC TTTTCCGAGCCAATCCAGGATGATGCTGTGTTCGGCGAGATTCGTGAAGGTGATACCAATTACCGTAATGTGAGA TCTCTGGTGATGTGTGTCAAAGCTAGATCTACTGACATGAGCAAGGTGAGCTGTATAGGAACCGTTGCCCTTATG CTGAAAGTCCAAATCGGCCTTGGCGTCCTCACAATACCCAGCTGTTTTGATATCCTTGGGATAGTGCCCGGAATT ATCGTCCTTCTTGCAATTGCAGTGACGACAACCTGGTCGAACTGGATGGTGGGCGTGTTTAAGATACGCCATCGT GATGTTTATGGAATCGGCGATGTTGGGAAGATGCTCCTTGGGCGCGTCGGATATGAGCTATTTGGCGGGGCTTAC ATCCTATGTGAGTGATCCTAGTCCGCATCCCAATCTGACTGCTGTCCTGACCTGTTGCAAGACTATATCTTCACT GGTGGTTCTGCCCTCTTGAGCATCTCAATCGCCTTTAACGCGCTGTCTGATCATGGAGCGTGCACTGCCATTTTT GTGGCTGTTGCGGCCATCATTGGATTCACATTCTCTAGTATCCAGACTCTTGCTCGTATAAGCTGGCTTGCCTGG GTAGGAGTGTCGTGCGTTATCATTGCCGGTAAGTATAGCTTCACAAGTCTAGACTTAGGATTGATCTAAACAATT TCTAGTATTCATTGTAACCATTGGTGTTGGGATCCAGGGCCATGCCCCAGTGACTGCGGGCGTTATCCCGGAACC CGACTATAAACTCTTCGGCAACCCAAGCTTTGTTGAGGCCATGACTGCCGTATCCACGATAACTTTAGCCTACGC CGGGGCTCCAGCATTCTTTAACATCGTCTCCGAAATGCGTGACCCACGCCTCTTTACTAAATCCCTAGCCATATG CCAAACTATTGTCACTGTAATCTACATCGTGGTCGGGACAGTCGTATACTATTACTGCGGATCCCATGTTGCCTC ACCAGCTCTTGGCTCTGCCGGACCCTTGCTCAAGAAGGTTAGCTATGGCTTTGCCCTACCGGGGCTGTGTGTTTC TGTGGTCCTATTCCTTCACGTGAGTCTTAATTCCATACCTTGTCCCTATTTATATACCTATCTAATCCCAAAAAT CGAATAAAGTTGCCTTCCAAACACATCTTCATGCGCATTCTTCGGGGCTCTAGGCACCTCACCGCACAGACCCCG ACGCACTGGATTGCCTGGATCGGCTCCACGTTTAG |