© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1828.t1 |
| Gene name | |
| Location | scaffold_007:141767..143123 |
| Strand | + |
| Gene length (bp) | 1356 |
| Transcript length (bp) | 1161 |
| Coding sequence length (bp) | 1161 |
| Protein length (aa) | 387 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02900 | LigB | Catalytic LigB subunit of aromatic ring-opening dioxygenase | 3.9E-35 | 114 | 357 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0008198 | ferrous iron binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0005506 | iron ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1828.t1 MSSAPVPPSSASSQNTSDTSTPKQKPILAVLSVITLLIAIAIAGFWGYTGSTSATDDANLFGLRRFFGAGGRAAS ASRGFAASTSTATSGRVLDQVKKLGEGVEDRVTMARTPVYFLSHGGPNIMYDHEHPAYHKLAEIGKEITTKVKPR AVVVFSAHWQAGRDTIQVNTAEITDLIYDFYGFPSHYYKEKYPNVGSREVANKVLDALSQAGIKGEGVKRGLDHG VWASFKCAFEPEKNPLNVPVVQVSLFKTEDPIQHYRLGQAVSRLREENILIIVSGMAVHNLRDMQFTWGDPRPLP YTASFDEALKEAVTKAPAEREQAMADLLKRPDARQAHPYFDHLLPIHIGAGAAGDDVGRRLWTLKEGSMSWAQYR FGEIANSTSSL* |
| Coding | >Ani_SJS100_1|g1828.t1 ATGTCTTCTGCCCCCGTTCCGCCATCCTCCGCATCATCTCAGAACACCAGTGACACAAGCACCCCAAAACAAAAA CCAATCCTGGCGGTCTTATCGGTGATTACTCTGCTGATTGCGATTGCTATCGCTGGCTTTTGGGGGTATACGGGA AGTACTAGCGCTACGGACGACGCCAATCTGTTCGGTCTTAGACGATTTTTTGGTGCGGGTGGTAGGGCTGCTTCT GCTTCGCGGGGGTTTGCTGCTAGTACTTCTACTGCTACCAGTGGTCGTGTTCTGGATCAAGTGAAGAAGTTGGGA GAAGGAGTTGAAGATCGAGTTACTATGGCGAGGACACCGGTTTATTTTTTGAGCCATGGTGGGCCAAATATCATG TATGATCATGAGCACCCGGCGTATCACAAGTTGGCTGAGATTGGGAAGGAAATCACTACTAAGGTGAAGCCGCGC GCGGTCGTGGTTTTCTCGGCTCATTGGCAGGCTGGGAGGGATACTATCCAAGTTAATACGGCGGAGATTACTGAT TTGATTTATGACTTTTATGGCTTCCCTAGCCATTACTACAAGGAGAAGTATCCTAATGTTGGAAGTCGGGAGGTT GCGAATAAGGTCTTGGATGCGCTGAGCCAGGCGGGTATTAAGGGTGAGGGGGTGAAGAGAGGACTCGACCATGGT GTGTGGGCGAGTTTCAAGTGCGCCTTTGAGCCTGAGAAGAACCCTCTGAATGTTCCTGTGGTGCAGGTATCGCTG TTCAAAACGGAGGATCCTATCCAACATTACCGACTGGGTCAGGCGGTTTCGAGACTCCGTGAGGAGAACATCTTG ATCATTGTCTCCGGTATGGCGGTGCATAACCTGCGCGATATGCAATTCACCTGGGGTGACCCGCGGCCTTTGCCG TATACTGCCAGCTTCGATGAAGCTCTGAAGGAGGCCGTCACGAAAGCGCCGGCGGAGCGAGAACAGGCTATGGCA GATTTGCTGAAACGTCCGGATGCTCGGCAGGCCCACCCGTACTTCGATCATCTGCTTCCAATTCATATTGGAGCC GGAGCTGCGGGCGATGATGTTGGGAGGAGACTGTGGACCTTGAAGGAGGGAAGCATGAGTTGGGCGCAGTATAGA TTCGGCGAGATTGCCAACAGTACTAGTTCTTTGTAG |
| Transcript | >Ani_SJS100_1|g1828.t1 ATGTCTTCTGCCCCCGTTCCGCCATCCTCCGCATCATCTCAGAACACCAGTGACACAAGCACCCCAAAACAAAAA CCAATCCTGGCGGTCTTATCGGTGATTACTCTGCTGATTGCGATTGCTATCGCTGGCTTTTGGGGGTATACGGGA AGTACTAGCGCTACGGACGACGCCAATCTGTTCGGTCTTAGACGATTTTTTGGTGCGGGTGGTAGGGCTGCTTCT GCTTCGCGGGGGTTTGCTGCTAGTACTTCTACTGCTACCAGTGGTCGTGTTCTGGATCAAGTGAAGAAGTTGGGA GAAGGAGTTGAAGATCGAGTTACTATGGCGAGGACACCGGTTTATTTTTTGAGCCATGGTGGGCCAAATATCATG TATGATCATGAGCACCCGGCGTATCACAAGTTGGCTGAGATTGGGAAGGAAATCACTACTAAGGTGAAGCCGCGC GCGGTCGTGGTTTTCTCGGCTCATTGGCAGGCTGGGAGGGATACTATCCAAGTTAATACGGCGGAGATTACTGAT TTGATTTATGACTTTTATGGCTTCCCTAGCCATTACTACAAGGAGAAGTATCCTAATGTTGGAAGTCGGGAGGTT GCGAATAAGGTCTTGGATGCGCTGAGCCAGGCGGGTATTAAGGGTGAGGGGGTGAAGAGAGGACTCGACCATGGT GTGTGGGCGAGTTTCAAGTGCGCCTTTGAGCCTGAGAAGAACCCTCTGAATGTTCCTGTGGTGCAGGTATCGCTG TTCAAAACGGAGGATCCTATCCAACATTACCGACTGGGTCAGGCGGTTTCGAGACTCCGTGAGGAGAACATCTTG ATCATTGTCTCCGGTATGGCGGTGCATAACCTGCGCGATATGCAATTCACCTGGGGTGACCCGCGGCCTTTGCCG TATACTGCCAGCTTCGATGAAGCTCTGAAGGAGGCCGTCACGAAAGCGCCGGCGGAGCGAGAACAGGCTATGGCA GATTTGCTGAAACGTCCGGATGCTCGGCAGGCCCACCCGTACTTCGATCATCTGCTTCCAATTCATATTGGAGCC GGAGCTGCGGGCGATGATGTTGGGAGGAGACTGTGGACCTTGAAGGAGGGAAGCATGAGTTGGGCGCAGTATAGA TTCGGCGAGATTGCCAACAGTACTAGTTCTTTGTAG |
| Gene | >Ani_SJS100_1|g1828.t1 ATGTCTTCTGCCCCCGTTCCGCCATCCTCCGCATCATCTCAGAACACCAGTGACACAAGCACCCCAAAACAAAAA CCAATCCTGGCGGTCTTATCGGTGATTACTCTGCTGATTGCGATTGCTATCGCTGGCTTTTGGGGGTATACGGGA AGTACTAGCGCTACGGACGACGCCAATCTGTTCGGTCTTAGACGATTTTTTGGTGCGGGTGGTAGGGCTGCTTCT GCTTCGCGGGGGTTTGCTGCTAGTACTTCTACTGCTACCAGTGGTCGTGTTCTGGATCAAGTGAAGAAGTTGGGA GAAGGAGTTGAAGATCGAGTTACTATGGCGAGGACACCGGTTTATTTTTTGAGCCATGGTGGGGTGGGTTTTTTA TCTTCTCCGTTTTGTTGTTTTTGTATGATTTGGGACGGGTTGGGATGCTGATTATGCGCAGCCAAATATCATGTA TGATCATGAGCACCCGGCGTATCACAAGTTGGCTGAGATTGGGAAGGAAATCACTACTAAGGTGAAGCCGCGCGC GGTCGTGGTTTTCTCGGCTCATTGGCAGGCTGGGAGGGATACTATCCAAGTTAATACGGCGGAGATTACTGATTT GATTTATGAGTATGTTGTCGCAAGGATTCTTTTCCCTAATAGTGGGATTTGAGTGGCCGGCTAACGTTGGGTCTA GCTTTTATGGCTTCCCTAGCCATTACTACAAGGAGAAGTATCCTAATGTTGGAAGTCGGGAGGTTGCGAATAAGG TCTTGGATGCGCTGAGCCAGGCGGGTATTAAGGGTGAGGGGGTGAAGAGAGGACTCGACCATGGTGTGTGGGCGA GTTTCAAGTGCGGTATGTTTGAATCAGATTGGACGATGGTCTGGCTGGGTAATGCTGACTTTTATAGCCTTTGAG CCTGAGAAGAACCCTCTGAATGTTCCTGTGGTGCAGGTATCGCTGTTCAAAACGGAGGATCCTATCCAACATTAC CGACTGGGTCAGGCGGTTTCGAGACTCCGTGAGGAGAACATCTTGATCATTGTCTCCGGTATGGCGGTGCATAAC CTGCGCGATATGCAATTCACCTGGGGTGACCCGCGGCCTTTGCCGTATACTGCCAGCTTCGATGAAGCTCTGAAG GAGGCCGTCACGAAAGCGCCGGCGGAGCGAGAACAGGCTATGGCAGATTTGCTGAAACGTCCGGATGCTCGGCAG GCCCACCCGTACTTCGATCATCTGCTTCCAATTCATATTGGAGCCGGAGCTGCGGGCGATGATGTTGGGAGGAGA CTGTGGACCTTGAAGGAGGGAAGCATGAGTTGGGCGCAGTATAGATTCGGCGAGATTGCCAACAGTACTAGTTCT TTGTAG |